Computer support for protocol-based treatment of cancer

Cancer treatment is often carried out within protocol-based clinical trials. An oncology clinic may take part in many trials each of which requires data to be collected for monitoring efficacy and toxicity of treatment. Subsequently, this data is analysed statistically to evaluate clinical objectives of the trial. To be scientifically valid, such analysis must be based on data that is both complete and correct. This is one motivating factor for introducing computer support for trial management. Further motivation is provided by concern that treatment is consistent with the protocol and the well-being of the patient. The complexity of many protocols, the life-threatening nature of cancer and the toxicity of treatment side-effects emphasise the safety-critical nature of oncology. The OaSiS system provides decision support for the protocol-based treatment of cancer patients with emphasis on the safety aspects of the advice it gives. It offers a highly graphical interface, employs integrity constraint checking techniques from logic databases to monitor compliance with a protocol and is implemented in PROLOG. The paper describes the main features of OaSiS and indicates work in progress and planned. 1

Establishing a support service for educational technology within a university

This paper covers some of the issues associated with the support of learning technology within an institution. It describes the activities of a working support service, and highlights approaches to some of the academic, technological, political and management issues that have helped it perform effectively over a four‐year period

Moment bounds for the Smoluchowski equation and their consequences

We prove uniform bounds on moments X_a = \sum_{m}{m^a f_m(x,t)} of the Smoluchowski coagulation equations with diffusion, valid in any dimension. If the collision propensities \alpha(n,m) of mass n and mass m particles grow more slowly than (n+m)(d(n) + d(m)), and the diffusion rate d(\cdot) is non-increasing and satisfies m^{-b_1} \leq d(m) \leq m^{-b_2} for some b_1 and b_2 satisfying 0 \leq b_2 < b_1 < \infty, then any weak solution satisfies X_a \in L^{\infty}(\mathbb{R}^d \times [0,T]) \cap L^1(\mathbb{R}^d \times [0,T]) for every a \in \mathbb{N} and T \in (0,\infty), (provided that certain moments of the initial data are finite). As a consequence, we infer that these conditions are sufficient to ensure uniqueness of a weak solution and its conservation of mass.Comment: 30 page

Effects of a torsion field on Big Bang nucleosynthesis

In this paper it is investigated whether torsion, which arises naturally in most theories of quantum gravity, has observable implications for the Big Bang nucleosynthesis. Torsion can lead to spin flips amongst neutrinos thus turning them into sterile neutrinos. In the early Universe they can alter the helium abundance which is tightly constrained by observations. Here I calculate to what extent torsion of the string theory type leads to a disagreement with the Big Bang nucleosynthesis predictions.Comment: accepted by General Relativity and Gravitatio

Strings in gravity with torsion

A theory of gravitation in 4D is presented with strings used in the material action in $U_4$ spacetime. It is shown that the string naturally gives rise to torsion. It is also shown that the equation of motion a string follows from the Bianchi identity, gives the identical result as the Noether conservation laws, and follows a geodesic only in the lowest order approximation. In addition, the conservation laws show that strings naturally have spin, which arises not from their motion but from their one dimensional structure.Comment: 16 page

Evidence of neutral transcriptome evolution in plants

The transcriptome of an organism is its set of gene transcripts (mRNAs) at a defined spatial and temporal locus. Because gene expression is affected markedly by environmental and developmental perturbations, it is widely assumed that transcriptome divergence among taxa represents adaptive phenotypic selection. This assumption has been challenged by neutral theories which propose that stochastic processes drive transcriptome evolution. To test for evidence of neutral transcriptome evolution in plants, we quantified 18 494 gene transcripts in nonsenescent leaves of 14 taxa of Brassicaceae using robust cross-species transcriptomics which includes a two-step physical and in silicobased normalization procedure based on DNA similarity among taxa. Transcriptome divergence correlates positively with evolutionary distance between taxa and with variation in gene expression among samples. Results are similar for pseudogenes and chloroplast genes evolving at different rates. Remarkably, variation in transcript abundance among root-cell samples correlates positively with transcriptome divergence among root tissues and among taxa. Because neutral processes affect transcriptome evolution in plants, many differences in gene expression among or within taxa may be nonfunctional, reflecting ancestral plasticity and founder effects. Appropriate null models are required when comparing transcriptomes in space and time

Sub-shot-noise shadow sensing with quantum correlations

The quantised nature of the electromagnetic field sets the classical limit to the sensitivity of position measurements. However, techniques based on the properties of quantum states can be exploited to accurately measure the relative displacement of a physical object beyond this classical limit. In this work, we use a simple scheme based on the split-detection of quantum correlations to measure the position of a shadow at the single-photon light level, with a precision that exceeds the shot-noise limit. This result is obtained by analysing the correlated signals of bi-photon pairs, created in parametric downconversion and detected by an electron multiplying CCD (EMCCD) camera employed as a split-detector. By comparing the measured statistics of spatially anticorrelated and uncorrelated photons we were able to observe a significant noise reduction corresponding to an improvement in position sensitivity of up to 17% (0.8dB). Our straightforward approach to sub-shot-noise position measurement is compatible with conventional shadow-sensing techniques based on the split-detection of light-fields, and yields an improvement that scales favourably with the detector’s quantum efficiency

Replication stress and chromatin context link ATM activation to a role in DNA replication

ATM-mediated signaling in response to DNA damage is a barrier to tumorigenesis. Here we asked whether replication stress could also contribute to ATM signaling. We demonstrate that, in the absence of DNA damage, ATM responds to replication stress in a hypoxia-induced heterochromatin-like context. In certain hypoxic conditions, replication stress occurs in the absence of detectable DNA damage. Hypoxia also induces H3K9me3, a histone modification associated with gene repression and heterochromatin. Hypoxia-induced replication stress together with increased H3K9me3 leads to ATM activation. Importantly, ATM prevents the accumulation of DNA damage in hypoxia. Most significantly, we describe a stress-specific role for ATM in maintaining DNA replication rates in a background of increased H3K9me3. Furthermore, the ATM-mediated response to oncogene-induced replication stress is enhanced in hypoxic conditions. Together, these data indicate that hypoxia plays a critical role in the activation of the DNA damage response, therefore contributing to this barrier to tumorigenesis

Massive Electrodynamics and Magnetic Monopoles

Including torsion in the geometric framework of the Weyl-Dirac theory we build up an action integral, and obtain from it a gauge covariant (in the Weyl sense) general relativistic massive electrodynamics. Photons having an arbitrary mass, electric, and magnetic currents (Dirac's monopole) coexist within this theory. Assuming that the space-time is torsionless, taking the photons mass zero, and turning to the Einstein gauge we obtain Maxwell's electrodynamics.Comment: LaTex File, 9 pages, no figure