Complete gluon bremsstrahlung corrections to the process b -> s l+ l-

In a recent paper, we presented the calculation of the order (alpha_s) virtual corrections to b->s l+ l- and of those bremsstrahlung terms which are needed to cancel the infrared divergences. In the present paper we work out the remaining order(alpha_s) bremsstrahlung corrections to b->s l+ l- which do not suffer from infrared and collinear singularities. These new contributions turn out to be small numerically. In addition, we also investigate the impact of the definition of the charm quark mass on the numerical results.Comment: 20 pages including 11 postscript figure

Specific recognition of a multiply phosphorylated motif in the DNA repair scaffold XRCC1 by the FHA domain of human PNK.

Short-patch repair of DNA single-strand breaks and gaps (SSB) is coordinated by XRCC1, a scaffold protein that recruits the DNA polymerase and DNA ligase required for filling and sealing the damaged strand. XRCC1 can also recruit end-processing enzymes, such as PNK (polynucleotide kinase 3'-phosphatase), Aprataxin and APLF (aprataxin/PNK-like factor), which ensure the availability of a free 3'-hydroxyl on one side of the gap, and a 5'-phosphate group on the other, for the polymerase and ligase reactions respectively. PNK binds to a phosphorylated segment of XRCC1 (between its two C-terminal BRCT domains) via its Forkhead-associated (FHA) domain. We show here, contrary to previous studies, that the FHA domain of PNK binds specifically, and with high affinity to a multiply phosphorylated motif in XRCC1 containing a pSer-pThr dipeptide, and forms a 2:1 PNK:XRCC1 complex. The high-resolution crystal structure of a PNK-FHA-XRCC1 phosphopeptide complex reveals the basis for this unusual bis-phosphopeptide recognition, which is probably a common feature of the known XRCC1-associating end-processing enzymes

Activation Energy of Surface Diffusion and Terrace Width Dynamics During the Growth of in (4×3) on Si (100) - (2×1) by Femtosecond Pulsed Laser Deposition

The nucleation and growth of indium on a vicinal Si (100) - (2×1) surface at high temperature by femtosecond pulsed laser deposition was investigated by in situ reflection high energy electron diffraction (RHEED). RHEED intensity relaxation was observed for the first ∼2 ML during the growth of In (4×3) by step flow. From the temperature dependence of the rate of relaxation, an activation energy of 1.4±0.2 eV of surface diffusion was determined. The results indicate that indium small clusters diffused to terrace step edges with a diffusion frequency constant of (1.0±0.1) × 1011 s-1. The RHEED specular beam split peak spacing, which is characteristic of a vicinal surface, was analyzed with the growth temperature to obtain the average terrace width. Gradual reduction in the terrace width during growth of In (4×3) was observed with In coverage and is attributed to the detachment of In atoms from terrace edges. At a substrate temperature of 405 °C, the average terrace width decreased from 61±10 Å, which corresponds to the vicinal Si(100) surface, to an equilibrium value of 45±7 Å after deposition of ∼23 ML. Further In coverage showed a transition of the RHEED pattern from (4×3) to (1×1) and the growth of rounded In islands (average height of ∼1 nm and width of ∼25 nm), as examined by ex situ atomic force microscopy. © 2008 American Institute of Physics. [DOI: 10.1063/1.2909923

Atomic Hydrogen Cleaning of InP(100): Electron Yield and Surface Morphology of Negative Electron Affinity Activated Surfaces

Atomic hydrogen cleaning of the InP(100) surface has been investigated using quantitative reflection high-energy electron diffraction. The quantum efficiency of the surface when activated to negative electron affinity was correlated with surface morphology. The electron diffraction patterns showed that hydrogen cleaning is effective in removing surface contaminants, leaving a clean, ordered, and (2×4)-reconstructed surface. After activation to negative electron affinity, a quantum efficiency of ∼6% was produced in response to photoactivation at 632 nm. Secondary electron emission from the hydrogen-cleaned InP(100)-(2×4) surface was measured and correlated to the quantum efficiency. The morphology of the vicinal InP(100) surface was investigated using electron diffraction. The average terrace width and adatom-vacancy density were measured from the (00) specular beam at the out-of-phase condition. With hydrogen cleaning time, there was some reduction in the average terrace width. The surface quality was improved with hydrogen cleaning, as indicated by the increased (00) spot intensity-to-background ratio at the out-of-phase condition, and improved quantum efficiency after activation to negative electron affinity. © 2002 American Institute of Physics. [DOI: 10.1063/1.1429796

Screening of Guava genotypes to natural infestation of fruit flies (Diptera:Tephritidae) in River Nile, Sennar and North Kordofan States, Sudan

The infesting species and their infestation indices of fruit flies were determined for guava genotypes (Psidium guajava L.),grown in River Nile, Sennar and North Kordofan States during the period from June to August 2010 .Twenty genotypes were selected from each state to be evaluated ,where ten mature fruits from each genotypes were harvested randomly from insecticide unsprayed trees. Fruits were brought to the laboratory and placed in individual plastic vials containing sand at the bottom to obtain the pupae. Infestation indices were estimated by means of total number of pupae/fruit. Pupal viability was then calculated based on the percentage of pupae resulted in fly emergence. Data was analyzed using analysis of variance and Duncan multiple range test for mean separations. Results showed that Guava fruits were infested by four fruit fly species Ceratitis cosyra, C.quinaira, C capitata and Bactrocera dorsalis constitute (82.2), (0.8), (16.7), (0.3% ) and 28.35 ,0.01 ,10.1 and 61.56% in River Nile and Sennar States respectively. While in North Kordofan State guava fruits were infested by C.cosyra, C.capitat and B.dorsalis 98.4,0.4 and 1.2% respectively. All the evaluated genotypes in River Nile and Sennar States were infested by the fruit fly with varying degrees only two genotypes 15 red flesh fruit and 19 white flesh fruit in Kordofan state were found free from fruit fly infestation. Infestation was much higher in Sennar and River Nile states (32 and 29 pupae/fruit) respectively compared to North Kordofan (1.6 pupae/fruit).The higher infestation rate occurred in ripe guava fruits (33) compared to 18 and 6 pupae/fruit in mature green and immature green fruit respectively

Perspectives: Quantum Mechanics on Phase Space

The basic ideas in the theory of quantum mechanics on phase space are illustrated through an introduction of generalities, which seem to underlie most if not all such formulations and follow with examples taken primarily from kinematical particle model descriptions exhibiting either Galileian or Lorentzian symmetry. The structures of fundamental importance are the relevant (Lie) groups of symmetries and their homogeneous (and associated) spaces that, in the situations of interest, also possess Hamiltonian structures. Comments are made on the relation between the theory outlined and a recent paper by Carmeli, Cassinelli, Toigo, and Vacchini.Comment: "Quantum Structures 2004" - Meeting of the International Quantum Structures Association; Denver, Colorado; 17-22 July, 200

Wave function-dependent mobility and suppression of interface roughness scattering in a strained SiGe p-channel field-effect structure

The 4 K Hall mobility has been measured in a top-gated, inverted, modulation-doped Si/Si0.8Ge0.2 structure having a Si:B doping layer beneath the alloy. From comparisons with theoretical calculations, we argue that, unlike an ordinary enhancement-mode SiGe p-channel metal–oxide–semiconductor structure, this configuration leads to a decrease of interface roughness scattering with increasing sheet carrier density. We also speculate on the nature of the interface charge observed in these structures at low temperature

Pan-squamous genomic profiling stratified by anatomic tumor site and viral association

Background: Squamous cell carcinomas (SCC) have diverse anatomic etiologies but may share common genomic biomarkers. We profiled 7,871 unique SCCs across nine anatomic sites to investigate commonality in genomic alterations (GA), tumor mutational burden (TMB), human papillomavirus (HPV) association, and mutational signatures. Methods: Tissue from over 8,100 unique SCC samples originating from nine anatomic sites (anogenital (anus, cervix, penis, vagina, vulva), esophagus, head and neck, lung, and skin) were sequenced by hybrid capture-based comprehensive genomic profiling to evaluate GA and TMB. About 3% of non-cutaneous SCC samples had UV signatures, indicative of potential primary site misdiagnoses, and were filtered from the analysis. Detection of HPV, including high-risk strains 16, 18, 31, 33, and 45, was implemented through de novo assembly of non-human sequencing reads and BLASTn comparison against all viral nucleotide sequences in the NCBI database. Results: The proportion of HPV+ patients by anatomic site varied, with the highest being anal (91%) and cervical (83%). The mutational landscape of each cohort was similar, regardless of anatomic origin, but clustered based on HPV status. The largest differences in GA frequency as stratified by HPV- vs. HPV+ were TP53 (87% vs. 12%), CDKN2A (45% vs. 6%), and PIK3CA (22% vs. 33%). The median TMB in cases originating from HPV-associated sites was similar, regardless of HPV status. Higher median TMB was observed in lung and skin cases, which exhibited significant enrichment of mutational signatures indicative of tobacco- and UV-induced DNA damage, respectively. Conclusions: HPV+ and HPV- SCC populations have distinct genomic profiles and, for the latter, anatomic site is correlated with TMB distribution, secondary to associated carcinogen exposure. As such, biomarkers such as TMB and UV signature can provide unexpected insight into site of origin misdiagnoses and may correlate with benefit from immune checkpoint inhibitors