Progression of phenotype in Leber's congenital amaurosis with a mutation at the LCA5 locus

BACKGROUND: Leber’s congenital amaurosis (LCA) accounts for 5% of inherited retinal disease and is usually inherited as an autosomal recessive trait. Genetic and clinical heterogeneity exist. Mutations have been described in the RPE65, CRB1, RPGRIP1, AIPL1, GUCY2D, and CRX genes and other pedigrees show linkage to the LCA3 and LCA5 loci. The latter is a new locus which maps to 6q11-q16. The ocular findings and the evolution of the macula staphyloma are described in five members of a Pakistani family with consanguinity and a mutation in the LCA5 gene. METHODS: 13 family members including five affected individuals consented to DNA analysis and ocular examination including fundal photography. RESULTS: Ocular abnormalities are described. The most striking feature was the progression of macula abnormalities in three brothers resulting in a colobomatous appearance in the eldest compared to only mild atrophy in the youngest. The phenotypic pattern of this mutation in this Pakistani family contrasts with the “Old Order River Brethren” who were of Swiss descent, in whom the mutation was first described. CONCLUSION: The evolution of a new phenotypic picture is presented to a mutation in LCA5

A curved multi-component aerosol hygroscopicity model framework: Part 1 – Inorganic compounds

A thermodynamic modelling framework to predict the equilibrium behaviour of mixed inorganic salt aerosols is developed, and then coupled with a technique for finding a solution to the Kohler equation in order to create a diameter dependent hygroscopic aerosol model (Aerosol Diameter Dependent Equilibrium Model – ADDEM). The model described here provides a robust and accurate inorganic basis using a mole fraction based activity coefficient model and adjusted energies of formation for treating solid precipitation. The model framework can accommodate organic components, though this added complexity is considered in a companion paper, this paper describes the development of the modelling architecture to be used and predictions of an inorganic model alone. The modelling framework has been developed to flexibly use a combination of mixing rules and other potentially more accurate techniques where available to calculate the water content. Comparisons with other state-of-the-art general equilibrium models and experimental data are presented and show excellent agreement. The Kelvin effect can be considered in this scheme using a variety of surface tension models. Comparison of predicted diameter dependent phenomena, such as the increased relative humidity for onset of deliquescence with decreasing diameter, with another diameter dependent model is very good despite the different approach used. The model is subject to various sensitivities. For the inorganic systems studied here, the model is sensitive to choice of surface tension scheme used, which decreases for larger aerosol. Large sensitivities are found for the value of dry density used. It is thus likely that the history of the aerosol studied in a hygroscopic tandem differential mobility analyser (HTDMA), specifically the nature of the drying process that will influence the final crystalline form, will create systematic uncertainties upon comparisons with theoretical predictions. However, the magnitudes of all of the above sensitivities are potentially less than those introduced when using a semi ideal growth factor analogue for certain conditions

The sensitivity of secondary organic aerosol component partitioning to the predictions of component properties – Part 1: A systematic evaluation of some available estimation techniques

A large number of calculations of the absorptive partitioning of organic compounds have been made using a number of methods to predict the component vapour pressures, <i>p</i><sup>0</sup>, and activity coefficients, <i>γ</i><sub><i>i</i></sub>, required in the calculations. The sensitivities of the predictions in terms of the condensed component masses, volatility, O:C ratio, molar mass and functionality distributions to the choice of <i>p</i><sup>0</sup> and <i>γ</i><sub><i>i</i></sub> models and to the number of components to represent the organic mixture have been systematically compared. The condensed component mass was found to be highly sensitive to the vapour pressure model, and less sensitive to both the activity coefficient model and the number of components used to represent the mixture although the sensitivity to the change in property estimation method increased substantially with increased simplification in the treatment of the organic mixture. This was a general finding and was also clearly evident in terms of the predicted component functionality, O:C ratio, molar mass and volatility distributions of the condensed organic components. Within the limitations of the study, this clearly demonstrates the requirement for more accurate representation of the <i>p</i><sup>0</sup> and <i>γ</i><sub><i>i</i></sub> of the semi-volatile organic proxy components used in simplified models as the degree of simplification increases. This presents an interesting paradox, since such reduction in complexity necessarily leads to divergence from the complex behaviour of real multicomponent atmospheric aerosol

A curved multi-component aerosol hygroscopicity model framework: Part 2 - Including organic compounds

International audienceThis paper describes the inclusion of organic particulate material within the Aerosol Diameter Dependent Equilibrium Model (ADDEM) framework described in the companion paper applied to inorganic aerosol components. The performance of ADDEM is analysed in terms of its capability to reproduce the behaviour of various organic and mixed inorganic/organic systems using recently published bulk data. Within the modelling architecture already described two separate thermodynamic models are coupled in an additive approach and combined with a method for solving the Kohler equation in order to develop a tool for predicting the water content associated with an aerosol of known inorganic/organic composition and dry size. For development of the organic module, the widely used group contribution method UNIFAC is employed to explicitly deal with the non-ideality in solution. The UNIFAC predictions for components of atmospheric importance were improved considerably by using revised interaction parameters derived from electro-dynamic balance studies. Using such parameters, the model was found to adequately describe mixed systems including 5?6 dicarboxylic acids, down to low relative humidity conditions. By comparison with electrodynamic balance data, it was also found that the model was capable of capturing the behaviour of aqueous aerosols containing Suwannee River Fulvic acid, a structure previously used to represent the functionality of complex oxidised macromolecules often found in atmospheric aerosols. The additive approach for modelling mixed inorganic/organic systems worked well for a variety of mixtures. As expected, deviations between model predictions and measurements increase with increasing concentration. Available surface tension models, used in evaluating the Kelvin term, were found to reproduce measured data with varying success. Deviations from experimental data increased with increased organic compound complexity. For components only slightly soluble in water, significant deviations from measured surface tension depression behaviour were predicted with both model formalisms tested. A Sensitivity analysis showed that such variation is likely to lead to predicted growth factors within the measurement uncertainty for growth factor taken in the sub-saturated regime. Greater sensitivity was found for the value of dry density used in the assumed form of the dried out aerosol. Comparison with a coupled thermodynamic approach showed that assumed values for interactions parameters may lead to erroneous results where a simple additive approach may provide more accurate results. However, where available, the use of coupled thermodynamics can better reproduce measured behaviour. Further work (and laboratory data) is required to assess whether this difference lies within the experimental uncertainty of observed hygroscopic behaviour for a variety of systems

Cloud condensation nucleus (CCN) behavior of organic aerosol particles generated by atomization of water and methanol solutions

Cloud condensation nucleus (CCN) experiments were carried out for malonic acid, succinic acid, oxalacetic acid, DL-malic acid, glutaric acid, DL-glutamic acid monohydrate, and adipic acid, using both water and methanol as atomization solvents, at three operating supersaturations (0.11%, 0.21%, and 0.32%) in the Caltech three-column CCN instrument (CCNC3). Predictions of CCN behavior for five of these compounds were made using the Aerosol Diameter Dependent Equilibrium Model (ADDEM). The experiments presented here expose important considerations associated with the laboratory measurement of the CCN behavior of organic compounds. Choice of atomization solvent results in significant differences in CCN activation for some of the compounds studied, which could result from residual solvent, particle morphology differences, and chemical reactions between the particle and gas phases. Also, significant changes in aerosol size distribution occurred after classification in a differential mobility analyzer (DMA) for malonic acid and glutaric acid. Filter analysis of adipic acid atomized from methanol solution indicates that gas-particle phase reactions may have taken place after atomization and before the methanol was removed from the sample gas stream. Careful consideration of these experimental issues is necessary for successful design and interpretation of laboratory CCN measurements

Intercomparison of Multiple UV-LIF Spectrometers using the Aerosol Challenge Simulator

Measurements of primary biological aerosol particles (PBAPs) have been conducted worldwide using ultraviolet light-induced fluorescence (UV-LIF) spectrometers. However, how these instruments detect and respond to known biological and non-biological particles, and how they compare, remains uncertain due to limited laboratory intercomparisons. Using the Defence Science and Technology Laboratory, Aerosol Challenge Simulator (ACS), controlled concentrations of biological and non-biological aerosol particles, singly or as mixtures, were produced for testing and intercomparison of multiple versions of the Wideband Integrated Bioaerosol Spectrometer (WIBS) and Multiparameter Bioaerosol Spectrometer (MBS). Although the results suggest some challenges in discriminating biological particle types across different versions of the same UV-LIF instrument, a difference in fluorescence intensity between the non-biological and biological samples could be identified for most instruments. While lower concentrations of fluorescent particles were detected by the MBS, the MBS demonstrates the potential to discriminate between pollen and other biological particles. This study presents the first published technical summary and use of the ACS for instrument intercomparisons. Within this work a clear overview of the data pre-processing is also presented, and documentation of instrument version/model numbers is suggested to assess potential instrument variations between different versions of the same instrument. Further laboratory studies sampling different particle types are suggested before use in quantifying impact on ambient classification.Peer reviewe

New and extended parameterization of the thermodynamic model AIOMFAC: calculation of activity coefficients for organic-inorganic mixtures containing carboxyl, hydroxyl, carbonyl, ether, ester, alkenyl, alkyl, and aromatic functional groups

We present a new and considerably extended parameterization of the thermodynamic activity coefficient model AIOMFAC (Aerosol Inorganic-Organic Mixtures Functional groups Activity Coefficients) at room temperature. AIOMFAC combines a Pitzer-like electrolyte solution model with a UNIFAC-based group-contribution approach and explicitly accounts for interactions between organic functional groups and inorganic ions. Such interactions constitute the salt-effect, may cause liquid-liquid phase separation, and affect the gas-particle partitioning of aerosols. The previous AIOMFAC version was parameterized for alkyl and hydroxyl functional groups of alcohols and polyols. With the goal to describe a wide variety of organic compounds found in atmospheric aerosols, we extend here the parameterization of AIOMFAC to include the functional groups carboxyl, hydroxyl, ketone, aldehyde, ether, ester, alkenyl, alkyl, aromatic carbon-alcohol, and aromatic hydrocarbon. Thermodynamic equilibrium data of organic-inorganic systems from the literature are critically assessed and complemented with new measurements to establish a comprehensive database. The database is used to determine simultaneously the AIOMFAC parameters describing interactions of organic functional groups with the ions H^+, Li^+, Na^+, K^+, NH_(4)^+, Mg^(2+), Ca^(2+), Cl^−, Br^−, NO_(3)^−, HSO_(4)^−, and SO_(4)^(2−). Detailed descriptions of different types of thermodynamic data, such as vapor-liquid, solid-liquid, and liquid-liquid equilibria, and their use for the model parameterization are provided. Issues regarding deficiencies of the database, types and uncertainties of experimental data, and limitations of the model, are discussed. The challenging parameter optimization problem is solved with a novel combination of powerful global minimization algorithms. A number of exemplary calculations for systems containing atmospherically relevant aerosol components are shown. Amongst others, we discuss aqueous mixtures of ammonium sulfate with dicarboxylic acids and with levoglucosan. Overall, the new parameterization of AIOMFAC agrees well with a large number of experimental datasets. However, due to various reasons, for certain mixtures important deviations can occur. The new parameterization makes AIOMFAC a versatile thermodynamic tool. It enables the calculation of activity coefficients of thousands of different organic compounds in organic-inorganic mixtures of numerous components. Models based on AIOMFAC can be used to compute deliquescence relative humidities, liquid-liquid phase separations, and gas-particle partitioning of multicomponent mixtures of relevance for atmospheric chemistry or in other scientific fields

Asymptotic stability, concentration, and oscillation in harmonic map heat-flow, Landau-Lifshitz, and Schroedinger maps on R^2

We consider the Landau-Lifshitz equations of ferromagnetism (including the harmonic map heat-flow and Schroedinger flow as special cases) for degree m equivariant maps from R^2 to S^2. If m \geq 3, we prove that near-minimal energy solutions converge to a harmonic map as t goes to infinity (asymptotic stability), extending previous work down to degree m = 3. Due to slow spatial decay of the harmonic map components, a new approach is needed for m=3, involving (among other tools) a "normal form" for the parameter dynamics, and the 2D radial double-endpoint Strichartz estimate for Schroedinger operators with sufficiently repulsive potentials (which may be of some independent interest). When m=2 this asymptotic stability may fail: in the case of heat-flow with a further symmetry restriction, we show that more exotic asymptotics are possible, including infinite-time concentration (blow-up), and even "eternal oscillation".Comment: 34 page

Boundedness of completely additive measures with application to 2-local triple derivations

We prove a Jordan version of Dorofeev's boundedness theorem for completely additive measues and use it to show that every (not necessarily linear nor continuous) 2-local triple derivation on a continuous JBW*-triple is a triple derivation.Comment: 30 page