Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Self-similarity in ultrafast nonlinear optics

International audienceRecent developments in nonlinear optics have led to the discovery of a new class of ultrashort pulse, the `optical similariton'. Optical similaritons arise when the interaction of nonlinearity, dispersion and gain in a high-power fibre amplifier causes the shape of an arbitrary input pulse to converge asymptotically to a pulse whose shape is self-similar. In comparison with optical solitons, which rely on a delicate balance of nonlinearity and anomalous dispersion and which can become unstable with increasing intensity, similaritons are more robust at high pulse powers. The simplicity and widespread availability of the components needed to build a self-similar amplifier capable of producing optical similaritons provides a convenient experimental platform to explore the fundamental nature of dynamical self-similarity. Here, we provide an overview of self-similar pulse propagation and scaling in optical fibre amplifiers, and their use in the development of high-power ultrafast optical sources, pulse synthesis and all-optical pulse regeneration

Self-similarity in ultrafast nonlinear optics

Recent developments in nonlinear optics have led to the discovery of a new class of ultrashort pulse, the 'optical similariton'. Optical similaritons arise when the interaction of nonlinearity, dispersion and gain in a high-power fibre amplifier causes the shape of an arbitrary input pulse to converge asymptotically to a pulse whose shape is self-similar. In comparison with optical solitons, which rely on a delicate balance of nonlinearity and anomalous dispersion and which can become unstable with increasing intensity, similaritons are more robust at high pulse powers. The simplicity and widespread availability of the components needed to build a self-similar amplifier capable of producing optical similaritons provides a convenient experimental platform to explore the fundamental nature of dynamical self-similarity. Here, we provide an overview of self-similar pulse propagation and scaling in optical fibre amplifiers, and their use in the development of high-power ultrafast optical sources, pulse synthesis and all-optical pulse regeneration