21 research outputs found

    Molecular evolution and phylogeographic analysis of wheat dwarf virus

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    Wheat dwarf virus (WDV) has caused considerable economic loss in the global production of grain crops. Knowledge of the evolutionary biology and population history of the pathogen remain poorly understood. We performed molecular evolution and worldwide phylodynamic analyses of the virus based on the genes in the protein-coding region of the entire viral genome. Our results showed that host-driven and geography-driven adaptation are major factors that affects the evolution of WDV. Bayesian phylogenetic analysis estimates that the average WDV substitution rate was 4.240 × 10βˆ’4 substitutions/site/year (95% credibility interval, 2.828 × 10βˆ’4–5.723 × 10βˆ’4), and the evolutionary rates of genes encoding proteins with virion-sense transcripts and genes encoding proteins with complementary-sense transcripts were different. The positively selected sites were detected in only two genes encoding proteins with complementary-sense, and WDV-barley are subject to stronger purifying selection than WDV-wheat. The time since the most recent common WDV ancestor was 1746 (95% credibility interval, 1517–1893) CE. Further analyses identified that the WDV-barley population and WDV-wheat population experienced dramatic expansion-decline episodes, and the expansion time of the WDV-barley population was earlier than that of the WDV-wheat population. Our phylogeographic analysis showed that the WDV population originating in Iran was subsequently introduced to Europe, and then spread from Eastern Europe to China

    Broadband Radio Spectral Observations of Solar Eclipse on 2008-08-01 and Implications on the Quiet Sun Atmospheric Model

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    Based on the joint-observations of the radio broadband spectral emissions of solar eclipse on August 1, 2008 at Jiuquan (total eclipse) and Huairou (partial eclipse) at the frequencies of 2.00 -- 5.60 GHz (Jiuquan), 2.60 -- 3.80 GHZ (Chinese solar broadband radiospectrometer, SBRS/Huairou), and 5.20 -- 7.60 GHz (SBRS/Huairou), the authors assemble a successive series of broadband spectrum with a frequency of 2.60 -- 7.60 GHz to observe the solar eclipse synchronously. This is the first attempt to analyze the solar eclipse radio emission under the two telescopes located at different places with broadband frequencies in the periods of total and partial eclipse. With these analyses, the authors made a new semiempirical model of the coronal plasma density of the quiet Sun and made a comparison with the classic models.Comment: 10 pages, 4 figures, published on Sci. China Ser. G, 2009, Vol.52, page 1765-177

    Obesity and Overweight Are Independently Associated with Greater Survival in Critically Ill Diabetic Patients: A Retrospective Cohort Study

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    Background. The relationship between obesity and the outcomes of critically ill diabetic patients is not completely clear. We aimed to assess the effects of obesity and overweight on the outcomes among diabetic patients in the intensive care unit (ICU). Methods. Critically ill diabetic patients in the ICU were classified into three groups according to their body mass index. The primary outcomes were 30-day and 90-day mortality. ICU and hospital length of stay (LOS) and incidence and duration of mechanical ventilation were also assessed. Cox regression models were developed to evaluate the relationship between obesity and overweight and mortality. Results. A total of 6108 eligible patients were included. The 30-day and 90-day mortality in the normal weight group were approximately 1.8 times and 1.5 times higher than in the obesity group and overweight group, respectively (P<0.001, respectively). Meanwhile, the ICU (median (IQ): 2.9 (1.7, 5.3) vs. 2.7 (1.6, 4.8) vs. 2.8 (1.8, 5.0)) and hospital (median (IQ): 8.3 (5.4, 14.0) vs. 7.9 (5.1, 13.0) vs. 8.3 (5.3, 13.6)) LOS in the obesity group and overweight group were not longer than in the normal weight group. Compared with normal weight patients, obese patients had significantly higher incidence of mechanical ventilation (58.8% vs. 64.7%, P<0.001) but no longer ventilation duration (median (IQ): 19.3 (7.0, 73.1) vs. 19.0 (6.0, 93.7), P=1). Multivariate Cox regression showed that obese and overweight patients had lower 30-day (HR (95% CI): 0.62 (0.51, 0.75); 0.76 (0.62, 0.92), respectively) and 90-day (HR (95% CI): 0.60 (0.51, 0.70); 0.79 (0.67, 0.93), respectively) mortality risks than normal weight patients. Conclusions. Obesity and overweight were independently associated with greater survival in critically ill diabetic patients, without increasing the ICU and hospital LOS. Large multicenter prospective studies are needed to confirm our findings and the underlying mechanisms warrant further investigation

    Control of Rock Block Fragmentation Based on the Optimization of Shaft Blasting Parameters

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    In the construction of shaft, the blockage of the mucking shaft may cause the mud-water inrush disaster. Oversized rock fragmentation is the main cause for the blockage of the mucking shaft in the raise boring machine (RBM) construction method. The influence degree of blasting parameters on rock fragmentation after blasting is quantified by adopting analytic hierarchy process (AHP). On this basis, the shaft blasting maximum rock fragmentation control model based on double hidden layer BP neural network is proposed. Results show that the maximum rock fragmentation discharged from the mucking shaft after blasting should not exceed 1/3 of the diameter of the slag chute. The influence weight of the minimum resistance line that accounts to 15.6%, when AHP is applied for the quantification of the blasting parameters, can be regarded as the most important blasting parameter. The average absolute errors between the predicted value and the actual value of the largest block size control model of the shaft blasting are only 2.6%. The inversion analysis of the model can rapidly obtain the required blasting parameters, which can be used to guide the construction of the tunnel ventilation shaft

    The Efficacy and Safety of Acellular Matrix Therapy for Diabetic Foot Ulcers: A Meta-Analysis of Randomized Clinical Trials

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    Background. Acellular matrix (AM) therapy has shown promise in the treatment of diabetic foot ulcers (DFUs) in several studies. The clinical effects of AM therapy were not well established. Therefore, we conducted a meta-analysis of randomized clinical trials (RCTs) to examine the efficacy and safety of AM therapy for patients with DFUs. Methods. A literature search of 5 databases was performed to identify RCTs comparing AM therapy to standard therapy (ST) in patients with DFUs. The primary outcome was the complete healing rate and the secondary outcomes mainly included time to complete healing and adverse events. Results. Nine RCTs involving 897 patients were included. Compared with ST group, patients allocated to AM group had a higher complete healing rate both at 12 weeks (risk ratio RR=1.73, 95% confidence interval (CI): 1.31 to 2.30) and 16 weeks (RR=1.56, 95% CI: 1.28 to 1.91), a shorter time to complete healing (mean difference MD=βˆ’2.41; 95% CI: -3.49 to -1.32), and fewer adverse events (RR=0.64, 95% CI: 0.44 to 0.93). Conclusion. The present study suggests that AM therapy as an adjuvant treatment could further promote the healing of full-thickness, noninfected, and nonischemia DFUs. AM therapy also has a safety profile. More large well-designed randomized clinical trials with long follow-up duration are needed to further explore the efficacy and safety of AM therapy for DFUs

    Global molecular evolution and phylogeographic analysis of barley yellow dwarf virus based on the cp and mp genes

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    Abstract Barley yellow dwarf virus (BYDV) has caused considerable losses in the global production of grain crops such as wheat, barley and maize. We investigated the phylodynamics of the virus by analysing 379 and 485 nucleotide sequences of the genes encoding the coat protein and movement protein, respectively. The maximum clade credibility tree indicated that BYDV-GAV and BYDV-MAV, BYDV-PAV and BYDV-PAS share the same evolutionary lineage, respectively. The diversification of BYDV arises from its adaptability to vector insects and geography. Bayesian phylogenetic analyses showed that the mean substitution rates of the coat and movement proteins of BYDV ranged from 8.327 × 10βˆ’β€‰4 (4.700 × 10βˆ’β€‰4–1.228 × 10βˆ’β€‰3) and 8.671 × 10βˆ’β€‰4 (6.143 × 10βˆ’β€‰4–1.130 × 10βˆ’β€‰3) substitutions/site/year, respectively. The time since the most recent common BYDV ancestor was 1434 (1040–1766) CE (Common Era). The Bayesian skyline plot (BSP) showed that the BYDV population experienced dramatic expansions approximately 8 years into the 21st century, followed by a dramatic decline in less than 15 years. Our phylogeographic analysis showed that the BYDV population originating in the United States was subsequently introduced to Europe, South America, Australia and Asia. The migration pathways of BYDV suggest that the global spread of BYDV is associated with human activities

    A Coupled Model of Two-Phase Fluid Flow and Heat Transfer to Transient Temperature Distribution and Seepage Characteristics for Water-Flooding Production Well with Multiple Pay Zones

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    Temperature is one of the most prominent factors affecting production operations, predicting the accurate wellbore-formation temperature in a water-flooding production well is of great importance for multiple applications. In this paper, an improved coupled model of oil&ndash;water two-phase fluid flow and heat transfer was developed to investigate the transient temperature behavior for a producing well with multiple pay zones. Firstly, a novel method was derived to simulate the water saturation and the water breakthrough time (WBT) for tubing, which are key monitoring parameters in the process of water flooding. Then, we incorporated water saturation and an equation set for immiscible displacement to calculate the seepage velocity and the pressure of the two-phase fluid in the pay zones. Next, the upward seepage velocity of the tubing fluid change with depth was focused on, and the proper coupled initial and boundary conditions are presented at the interfaces, therewith the implicit finite difference method was used to compute the transient temperature with the input of the seepage characteristics for the reservoirs. Meanwhile, the validity of the proposed model has been verified by the typical model. Finally, a sensitivity analysis delineated that the production rate and the production time had a significant impact on the tubing fluid temperature. The overburden was hotter with a lower volumetric heat capacity or a higher thermal conductivity. In addition, the sensitivity of the porosity and the irreducible water saturation to formation temperature was significantly different before and after the WBT. The coupled model presented herein helps to advance the transient seepage characteristics analysis of pay zones, the precise temperature prediction is very useful for reservoir characterization and production analysis purposes and provides insight for designing the exploitation scheme in deep reservoirs and geothermal resources

    Comparison of the efficacy of different androgens measured by LC-MS/MS in representing hyperandrogenemia and an evaluation of adrenal-origin androgens with a dexamethasone suppression test in patients with PCOS

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    Abstract Background The aims of this study were to compare the efficacy of different androgens measured by liquid chromatography-mass spectrometry (LC-MS/MS) in representing hyperandrogenemia and to evaluate adrenal-origin androgens with a dexamethasone suppression test in patients with polycystic ovary syndrome (PCOS). Methods One hundred and two patients with PCOS and 41 healthy volunteers were recruited and total serum testosterone (TT), androstenedione (AD), dehydroepiandrosterone (DHEA) and dehydroepiandrosterone sulfate (DHEA-S) were measured by LC-MS/MS. ROC analysis was performed to compare the efficacy of different androgens in representing hyperandrogenemia. Dexamethasone suppression test was performed in 51 patients with PCOS and above indicators were measured after dexamethasone administration. The prediction efficacy of DHEA and DHEA-S at baseline in the dexamethasone suppression test was evaluated with ROC analysis. Results The AUCs of TT, AD, free androgen index (FAI) and DHEA-S in ROC analysis for representing hyperandrogenemia were 0.816, 0.842, 0.937 and 0.678, respectively. The optimal cutoff value of TT was 0.337 ng/ml, with a sensitivity of 72.0% and specificity of 82.93%. The optimal cutoff value for AD was 1.309 ng/ml, with a sensitivity of 81.0% and specificity of 73.17%. The optimal cutoff value of the FAI was 2.50, with a sensitivity of 87.0% and specificity of 92.68%. Alternatively, AD or FAI more than the optimal cutoff values as evidence of hyperandrogenemia had the highest sensitivity of 91.18%. The levels of cortisol, DHEA and DHEA-S were all suppressed to narrow ranges after dexamethasone administration. Nine and 8 of 51 patients with PCOS had significant decreases in TT and AD, respectively. DHEA can be used as a indicator for predicting significant decrease of TT in dexamethasone suppression test with cutoff value of 13.28 ng/ml. A total of 27.5% (14/51) of patients had DHEA-S excess, but only 1 of 9 patients who had a significant decrease in TT had elevated level of DHEA-S at baseline. Conclusions AD measured by LC-MS/MS can represent hyperandrogenemia in PCOS patients and, combined with TT or FAI, can improve the screening efficiency of hyperandrogenemia. Seventeen percent of PCOS patients had adrenal-origin androgen dominance, with TT significantly decreasing after 2 days of dexamethasone administration. Adrenal-origin androgen dominance was not parallel with DHEA-S excess in patients with PCOS
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