Hairpin DNA functionalized gold nanorods for mRNA detection in homogenous solution

We report a novel fluorescent probe for mRNA detection. It consists of a gold nanorod (GNR) functionalized with fluorophore labeled hairpin oligonucleotides (hpDNA) that are complementary to the mRNA of a target gene. This nanoprobe was found to be sensitive to a complementary oligonucleotide, as indicated by significant changes in both fluorescence intensity and lifetime. The influence of the surface density of hpDNA on the performance of this nanoprobe was investigated, suggesting that high hybridization efficiency could be achieved at a relatively low surface loading density of hpDNA. However, steady-state fluorescence spectroscopy revealed better overall performance, in terms of sensitivity and detection range, for nanoprobes with higher hairpin coverage. Time-resolved fluorescence lifetime spectroscopy revealed significant lifetime changes of the fluorophore upon hybridization of hpDNA with targets, providing further insight on the hybridization kinetics of the probe as well as the quenching efficiency of GNRs

Prehistoric trans-continental cultural exchange in the Hexi Corridor, northwest China

We report dozens of direct radiocarbon dates on charred grains from 22 archaeological sites of the Neolithic and Bronze Ages in the Hexi Corridor, northwest China, a key region for trans-Eurasian exchange in prehistoric and historical times. These charred grains include remains of wheat and barley domesticated in southwest Asia and broomcorn and foxtail millet which originated from north China. Together with previously published radiocarbon dates, we consider these newly obtained radiocarbon results in the context of material cultures associated with them, to explore an episode of trans-continental cultural exchange foci at the Hexi Corridor. Our results show that millet cultivators who used painted potteries from the western Loess Plateau first settled the Hexi Corridor around 4800 BP. Communities who cultivated wheat and barley moved into this region from the west around 4000 BP, bringing with them technologies and materials not seen in central China before, including bronze metallurgy, mud bricks, and mace heads. This was part of the east-west contact which became evident in the Hexi Corridor since the late fifth millennium BP, and continued over the subsequent two millennia, and predated the formation of the overland Silk Road in the Han Dynasty (202 BC-AD 220)

Revealing the photophysics of gold-nanobeacons via time-resolved fluorescence spectroscopy

We demonstrate that time-resolved fluorescence spectroscopy is a powerful tool to investigate the conformation states of hairpin DNA on the surface of gold nanoparticles (AuNPs) and energy transfer processes in Au-nanobeacons. Long-range fluorescence quenching of Cy5 by AuNPs has been found to be in good agreement with electrodynamics modelling. Moreover, time-correlated single-photon counting (TCSPC) is shown to be promising for real-time monitoring of the hybridization kinetics of Au-nanobeacons, with up to 60% increase in decay time component and 300% increase in component fluorescence fraction observed. Our results also indicate the importance of the stem and spacer designs for the performance of Au-nanobeacons

Reconstructing the earliest known composite-tiled roofs from the Chinese Loess Plateau

The origins of composite tiles, one of the oldest forms of roofing, are still unclear. This study is based on a set of over 5000 clay tile fragments excavated from a single context in the Qiaocun site on the Chinese Loess Plateau, dated to ~ 2400-2200 BCE (Early Longshan Period). By combining morphological measurement statistics, 3D modeling, computer-based simulations, and reference to historical and archaeological records, we reconstruct the earliest known composite-tile roofing techniques and demonstrate that tile production was under a low-level standardization, with manual control forming a key agent during the roofing process. The quantitative study of the composite roof tiles from Qiaocun was then placed in its archaeological context and compared with other sites on the Loess Plateau. It was found that tile-roofed buildings were, by necessity, community projects. Such structures served as nodes in larger social communication networks; additionally, their appearance was linked to intensified social complexity in public affairs during the Longshan Period. The invention of clay tiles was associated with the inception of thick rammed-earth walls which had sufficient strength to serve as load-bearing structures for heavy tiled roofs. The roof tiles excavated from Qiaocun site indicate that the Loess Plateau was a key center for the origin and spread of composite tiles and related roofing and construction methods, suggesting a Longshan-Western Zhou tradition of roofing techniques in East Asia

Shift in subsistence crop dominance from broomcorn millet to foxtail millet around 5500 BP in the western Loess Plateau

Broomcorn and foxtail millet were the most important crops in northern China during the Neolithic period. Although the significance of broomcorn millet in human subsistence exceeded that of foxtail millet during the early Neolithic, this pattern was reversed by the end of Neolithic period. However, the process underlying this shift remains unclear. The recent excavation of the Gedachuan (GDC) in Zhangjiachuan county has revealed an abundance of relics including millet crop remains from relatively continuous strata of the Yangshao and Qijia cultures, and therefore provides a unique opportunity to examine how and when foxtail millet replaced broomcorn millet as the dominant crop in the western Loess Plateau during the Neolithic period. In this study, we identify 1,738 and 2,686 broomcorn and foxtail millet remains, respectively, from 74 flotation samples, accounting for 38.81% and 59.98% of total plant remains, respectively. Compared with 23 direct dates of carbonized crop grains in GDC, we propose that the weight of foxtail millet in plant subsistence of GDC first exceeded that of broomcorn millet as early as ∼5,500 BP, filling an important gap in the archaeobotanical record from the western Loess Plateau. Further comparative analysis of multidisciplinary data suggests the shift in significance of these two millet crops during the late Neolithic may have been triggered by variations in human settlement intensity and climate change in the western Loess Plateau. The results of this study also suggest that the Banpo Phase of Yangshao Culture survived in the western Loess Plateau as late as ∼5,600 BP

Transformation of animal utilization strategies from the late Neolithic to the Han Dynasty in the Hexi Corridor, northwest China: Zooarchaeological and stable isotopic evidence

The trajectory and influencing factors for changes to ancient human livelihoods in the Hexi Corridor of northwest China have been intensively discussed. The Hexi Corridor is a key crossroads for trans-Eurasian exchange in both the prehistoric and historical periods. Although most studies have focused on the reconstruction of human paleodiet and plant subsistence, the diachronic change of animal utilization strategies spanning the prehistoric and historical periods remains unclear, due to the absence of zooarchaeological and isotopic studies, especially in Han Dynasty (202 BCE–220 CE). Here we report new zooarchaeological, stable isotope, and radiocarbon dating data from the Heishuiguo Cemetery of the Han Dynasty in the Hexi Corridor, indicating that humans mainly used domestic chickens, pigs and sheep as funerary objects, with other buried livestock including cattle, horses and dogs. Stable carbon and nitrogen isotope data suggest humans might have fed chickens, pigs and dogs more C4 foods (likely millets or their byproducts) than herbivorous livestock in the Heishuiguo during the Han Dynasty. Compared to other prehistoric zooarchaeological and isotopic studies in the Hexi Corridor, we detected an increasing significance of herbivorous livestock in animal utilization strategies compared with omnivorous livestock, and a basic declining weight of C4 foods in fodders from ∼2,300 to 200 BCE, which was probably induced by long-distance exchange and climate fluctuation. However, the trend was reversed during the Han Dynasty in the Hexi Corridor, primarily due to the control of the area by the Han Empire and the subsequent massive immigration from the Yellow River valley of north China

Localized management of non-indigenous animal domesticates in Northwestern China during the Bronze Age.

The movements of ancient crop and animal domesticates across prehistoric Eurasia are well-documented in the archaeological record. What is less well understood are the precise mechanisms that farmers and herders employed to incorporate newly introduced domesticates into their long-standing husbandry and culinary traditions. This paper presents stable isotope values (δ13C, δ15N) of humans, animals, and a small number of plants from the Hexi Corridor, a key region that facilitated the movement of ancient crops between Central and East Asia. The data show that the role of animal products in human diets was more significant than previously thought. In addition, the diets of domestic herbivores (sheep/goat, and cattle) suggest that these two groups of domesticates were managed in distinct ways in the two main ecozones of the Hexi Corridor: the drier Northwestern region and the wetter Southeastern region. Whereas sheep and goat diets are consistent with consumption of naturally available vegetation, cattle exhibit a higher input of C4 plants in places where these plants contributed little to the natural vegetation. This suggests that cattle consumed diets that were more influenced by human provisioning, and may therefore have been reared closer to the human settlements, than sheep and goats

Electromagnetic enhancement of ordered silver nanorod arrays evaluated by discrete dipole approximation

The enhancement factor (EF) of surface-enhanced Raman scattering (SERS) from two-dimensional (2-D) hexagonal silver nanorod (AgNR) arrays were investigated in terms of electromagnetic (EM) mechanism using the discrete dipole approximation (DDA) method. The dependence of EF on several parameters, i.e., structure, length, excitation wavelength, incident angle and polarization, and gap size has been investigated. “Hotspots” were found distributed in the gaps between adjacent nanorods. Simulations of AgNR arrays of different lengths revealed that increasing rod length from 374 to 937 nm (aspect ratio from 2.0 to 5.0) generated more “hotspots” but not necessarily increased EF under both 514 and 532 nm excitations. The narrow lateral gap (in the incident plane) was found to result in strong EF, while the dependence of EF on the diagonal gap (out of the incident plane) showed an oscillating behavior. The EF of the array was highly dependent on the angle and polarization of the incident light. The structure of AgNR and the excitation wavelength were also found to affect the EF. The EF of random arrays was stronger than that of an ordered one with the same average gap of 21 nm, which could be explained by the exponential dependence of EF on the lateral gap size. Our results also suggested that absorption rather than extinction or scattering could be a good indicator of EM enhancement. It is expected that the understanding of the dependence of local field enhancement on the structure of the nanoarrays and incident excitations will shine light on the optimal design of efficient SERS substrates and improved performance

Red list of China's forest ecosystems: A conservation assessment and protected area gap analysis

Current biodiversity loss is far greater than at any time in human history. As complementary tool to prioritize biodiversity for conservation, the IUCN Red List of Ecosystems (RLE) is well justified as a conservation tool. Although China's biodiversity is among the world's richest, a significant part of this diversity is under threat. Based on the distribution of 229 forest formations, we assessed the risk status according to the IUCN RLE criteria, and evaluated the conservation status of threatened forests by comparing ecosystem distribution with terrestrial national and provincial nature reserves (NNRs and PNRs, respectively). We found that 90 threatened forest formations accounted for 16% of the area, but for 39.3% of the number of assessed formations. Threatened forest formations were mainly located in western Sichuan, Yunnan, southeastern Xizang, southwestern Guangxi, Hainan Island, northeastern China, and the mountains of Taiwan. Tropical rain forests and evergreen broadleaved forests together accounted for the highest number of threatened formations. Northern Xinjiang (with the Tianshan and Altai Mountains) proved to be a unique area that has rarely been identified as hotspot of plant conservation. On average, NNRs covered 13.2%, and NNRs and PNRs together covered 22.7%, of the threatened forest distribution areas. However, 15 threatened forest formations were not covered by NNRs or PNRs. We suggest that the red list of ecosystems will contribute towards providing a more informative picture of the status of biodiversity. Our work highlights the need to use the red list of ecosystems as additional tool in plant conservation