6,029 research outputs found

    Bioethanol from poplar clone Imola: an environmentally viable alternative to fossil fuel?

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    BACKGROUND: Environmental issues, e.g. climate change, fossil resource depletion have triggered ambitious national/regional policies to develop biofuel and bioenergy roles within the overall energy portfolio to achieve decarbonising the global economy and increase energy security. With the 10 % binding target for the transport sector, the Renewable Energy Directive confirms the EU’s commitment to renewable transport fuels especially advanced biofuels. Imola is an elite poplar clone crossed from Populus deltoides Bartr. and Populus nigra L. by Research Units for Intensive Wood Production, Agriculture Research Council in Italy. This study examines its suitability for plantation cultivation under short or very short rotation coppice regimes as a potential lignocellulosic feedstock for the production of ethanol as a transport biofuel. A life cycle assessment (LCA) approach was used to model the cradle-to-gate environmental profile of Imola-derived biofuel benchmarked against conventional fossil gasoline. Specific attention was given to analysing the agroecosystem fluxes of carbon and nitrogen occurring in the cultivation of the Imola biomass in the biofuel life cycle using a process-oriented biogeochemistry model (DeNitrification-DeComposition) specifically modified for application to 2G perennial bioenergy crops and carbon and nitrogen cycling. RESULTS: Our results demonstrate that carbon and nitrogen cycling in perennial crop–soil ecosystems such as this example can be expected to have significant effects on the overall environmental profiles of 2G biofuels. In particular, soil carbon accumulation in perennial biomass plantations is likely to be a significant component in the overall greenhouse gas balance of future biofuel and other biorefinery products and warrants ongoing research and data collection for LCA models. We conclude that bioethanol produced from Imola represents a promising alternative transport fuel offering some savings ranging from 35 to 100 % over petrol in global warming potential, ozone depletion and photochemical oxidation impact categories. CONCLUSIONS: Via comparative analyses for Imola-derived bioethanol across potential supply chains, we highlight priority issues for potential improvement in 2G biofuel profiling. Advanced clones of poplar such as Imola for 2G biofuel production in Italy as modelled here show potential to deliver an environmentally sustainable lignocellulosic biorefinery industry and accelerate advanced biofuel penetration in the transport sector. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13068-015-0318-8) contains supplementary material, which is available to authorized users

    Running Experiments with Confidence and Sanity

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    Analyzing data from large experimental suites is a daily task for anyone doing experimental algorithmics. In this paper we report on several approaches we tried for this seemingly mundane task in a similarity search setting, reflecting on the challenges it poses. We conclude by proposing a workflow, which can be implemented using several tools, that allows to analyze experimental data with confidence. The extended version of this paper and the support code are provided at https://github.com/Cecca/running-experiments

    Dirac Equation with Spin Symmetry for the Modified P\"oschl-Teller Potential in DD-dimensions

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    We present solutions of the Dirac equation with spin symmetry for vector and scalar modified P\"oschl-Teller potential within framework of an approximation of the centrifugal term. The relativistic energy spectrum is obtained using the Nikiforov-Uvarov method and the two-component spinor wavefunctions are obtain are in terms of the Jacobi polynomials. It is found that there exist only positive-energy states for bound states under spin symmetry, and the energy levels increase with the dimension and the potential range parameter α\alpha.Comment: 9 pages and 1tabl

    A transcriptome-driven analysis of epithelial brushings and bronchial biopsies to define asthma phenotypes in U-BIOPRED

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    RATIONALE AND OBJECTIVES: Asthma is a heterogeneous disease driven by diverse immunologic and inflammatory mechanisms. We used transcriptomic profiling of airway tissues to help define asthma phenotypes. METHODS: The transcriptome from bronchial biopsies and epithelial brushings of 107 moderate-to-severe asthmatics were annotated by gene-set variation analysis (GSVA) using 42 gene-signatures relevant to asthma, inflammation and immune function. Topological data analysis (TDA) of clinical and histological data was used to derive clusters and the nearest shrunken centroid algorithm used for signature refinement. RESULTS: 9 GSVA signatures expressed in bronchial biopsies and airway epithelial brushings distinguished two distinct asthma subtypes associated with high expression of T-helper type 2 (Th-2) cytokines and lack of corticosteroid response (Group 1 and Group 3). Group 1 had the highest submucosal eosinophils, high exhaled nitric oxide (FeNO) levels, exacerbation rates and oral corticosteroid (OCS) use whilst Group 3 patients showed the highest levels of sputum eosinophils and had a high BMI. In contrast, Group 2 and Group 4 patients had an 86% and 64% probability of having non-eosinophilic inflammation. Using machine-learning tools, we describe an inference scheme using the currently-available inflammatory biomarkers sputum eosinophilia and exhaled nitric oxide levels along with OCS use that could predict the subtypes of gene expression within bronchial biopsies and epithelial cells with good sensitivity and specificity. CONCLUSION: This analysis demonstrates the usefulness of a transcriptomic-driven approach to phenotyping that segments patients who may benefit the most from specific agents that target Th2-mediated inflammation and/or corticosteroid insensitivity

    Male germ cell-specific protein Trs4 binds to multiple proteins

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    Temperature-related sequence 4 (Trs4) has been identified as a testis-specific gene with expression sensitive to the abdominal temperature changes induced by artificial cryptorchidism. In murine testes, Trs4 mRNA was detected in round spermatids and its protein was localized mainly in the elongating spermatids as well as in the acrosomes and tails of mature spermatozoa. Using a yeast two-hybrid screening system, we identified Rshl-2, Gstmu1, and Ddc8 as putative binding partners of the Trs4 protein in mouse testes. Their interactions were confirmed by in vivo and in vitro binding assays. Further studies demonstrated that Ddc8, a newly identified gene with unknown functions, displayed a similar expression pattern with Trs4 in mouse testes. In particular, Trs4, Ddc8, and Rshl-2 proteins were co-localized to the tails of mature spermatozoa. These results suggested that Trs4 might be involved in diverse processes of spermiogenesis and/or fertilization through interactions with its multiple binding partners. © 2009 Elsevier Inc.postprin

    Galaxies in the EAGLE hydrodynamical simulation and in the Durham and Munich semi-analytical models

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    We compare global predictions from the eagle hydrodynamical simulation, and two semi-analytic (SA) models of galaxy formation, l-galaxies and galform. All three models include the key physical processes for the formation and evolution of galaxies and their parameters are calibrated against a small number of observables at z ≈ 0. The two SA models have been applied to merger trees constructed from the eagle dark matter only simulation. We find that at z ≤ 2, both the galaxy stellar mass functions for stellar masses M* 109.5 M⊙ differ in some instances by an order of magnitude, while the stellar mass–size relation in eagle is a factor of ≈2 tighter than for the two SA models. Our results suggest the need for a revision of how SA models treat the effect of baryonic self-gravity on the underlying dark matter. The treatment of gas flows in the models needs to be revised based on detailed comparison with observations to understand in particular the evolution of the stellar mass–metallicity relation
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