Growth-inhibitory effects of the chemopreventive agent indole-3-carbinol are increased in combination with the polyamine putrescine in the SW480 colon tumour cell line

BACKGROUND: Many tumours undergo disregulation of polyamine homeostasis and upregulation of ornithine decarboxylase (ODC) activity, which can promote carcinogenesis. In animal models of colon carcinogenesis, inhibition of ODC activity by difluoromethylornithine (DFMO) has been shown to reduce the number and size of colon adenomas and carcinomas. Indole-3-carbinol (I3C) has shown promising chemopreventive activity against a range of human tumour cell types, but little is known about the effect of this agent on colon cell lines. Here, we investigated whether inhibition of ODC by I3C could contribute to a chemopreventive effect in colon cell lines. METHODS: Cell cycle progression and induction of apoptosis were assessed by flow cytometry. Ornithine decarboxylase activity was determined by liberation of CO(2 )from (14)C-labelled substrate, and polyamine levels were measured by HPLC. RESULTS: I3C inhibited proliferation of the human colon tumour cell lines HT29 and SW480, and of the normal tissue-derived HCEC line, and at higher concentrations induced apoptosis in SW480 cells. The agent also caused a decrease in ODC activity in a dose-dependent manner. While administration of exogenous putrescine reversed the growth-inhibitory effect of DFMO, it did not reverse the growth-inhibition following an I3C treatment, and in the case of the SW480 cell line, the effect was actually enhanced. In this cell line, combination treatment caused a slight increase in the proportion of cells in the G(2)/M phase of the cell cycle, and increased the proportion of cells undergoing necrosis, but did not predispose cells to apoptosis. Indole-3-carbinol also caused an increase in intracellular spermine levels, which was not modulated by putrescine co-administration. CONCLUSION: While indole-3-carbinol decreased ornithine decarboxylase activity in the colon cell lines, it appears unlikely that this constitutes a major mechanism by which the agent exerts its antiproliferative effect, although accumulation of spermine may cause cytotoxicity and contribute to cell death. The precise mechanism by which putrescine enhances the growth inhibitory effect of the agent remains to be elucidated, but does result in cells undergoing necrosis, possibly following accumulation in the G(2)/M phase of the cell cycle

A diagnosis of the plasma waves responsible for the explosive energy release of substorm onset

During geomagnetic substorms, stored magnetic and plasma thermal energies are explosively converted into plasma kinetic energy. This rapid reconfiguration of Earth’s nightside magnetosphere is manifest in the ionosphere as an auroral display that fills the sky. Progress in understanding of how substorms are initiated is hindered by a lack of quantitative analysis of the single consistent feature of onset; the rapid brightening and structuring of the most equatorward arc in the ionosphere. Here, we exploit state-of-the-art auroral measurements to construct an observational dispersion relation of waves during substorm onset. Further, we use kinetic theory of high-beta plasma to demonstrate that the shear Alfven wave dispersion relation bears remarkable similarity to the auroral dispersion relation. In contrast to prevailing theories of substorm initiation, we demonstrate that auroral beads seen during the majority of substorm onsets are likely the signature of kinetic Alfven waves driven unstable in the high-beta magnetotail

Low potency toxins reveal dense interaction networks in metabolism

Background The chemicals of metabolism are constructed of a small set of atoms and bonds. This may be because chemical structures outside the chemical space in which life operates are incompatible with biochemistry, or because mechanisms to make or utilize such excluded structures has not evolved. In this paper I address the extent to which biochemistry is restricted to a small fraction of the chemical space of possible chemicals, a restricted subset that I call Biochemical Space. I explore evidence that this restriction is at least in part due to selection again specific structures, and suggest a mechanism by which this occurs. Results Chemicals that contain structures that our outside Biochemical Space (UnBiological groups) are more likely to be toxic to a wide range of organisms, even though they have no specifically toxic groups and no obvious mechanism of toxicity. This correlation of UnBiological with toxicity is stronger for low potency (millimolar) toxins. I relate this to the observation that most chemicals interact with many biological structures at low millimolar toxicity. I hypothesise that life has to select its components not only to have a specific set of functions but also to avoid interactions with all the other components of life that might degrade their function. Conclusions The chemistry of life has to form a dense, self-consistent network of chemical structures, and cannot easily be arbitrarily extended. The toxicity of arbitrary chemicals is a reflection of the disruption to that network occasioned by trying to insert a chemical into it without also selecting all the other components to tolerate that chemical. This suggests new ways to test for the toxicity of chemicals, and that engineering organisms to make high concentrations of materials such as chemical precursors or fuels may require more substantial engineering than just of the synthetic pathways involved

The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle

Leaf-cutter ants are one of the most important herbivorous insects in the Neotropics, harvesting vast quantities of fresh leaf material. The ants use leaves to cultivate a fungus that serves as the colony's primary food source. This obligate ant-fungus mutualism is one of the few occurrences of farming by non-humans and likely facilitated the formation of their massive colonies. Mature leaf-cutter ant colonies contain millions of workers ranging in size from small garden tenders to large soldiers, resulting in one of the most complex polymorphic caste systems within ants. To begin uncovering the genomic underpinnings of this system, we sequenced the genome of Atta cephalotes using 454 pyrosequencing. One prediction from this ant's lifestyle is that it has undergone genetic modifications that reflect its obligate dependence on the fungus for nutrients. Analysis of this genome sequence is consistent with this hypothesis, as we find evidence for reductions in genes related to nutrient acquisition. These include extensive reductions in serine proteases (which are likely unnecessary because proteolysis is not a primary mechanism used to process nutrients obtained from the fungus), a loss of genes involved in arginine biosynthesis (suggesting that this amino acid is obtained from the fungus), and the absence of a hexamerin (which sequesters amino acids during larval development in other insects). Following recent reports of genome sequences from other insects that engage in symbioses with beneficial microbes, the A. cephalotes genome provides new insights into the symbiotic lifestyle of this ant and advances our understanding of host–microbe symbioses

Increasing the initiation efficiency of ruthenium-based ring-opening metathesis initiators: Effect of excess phosphine

Ring-opening metathesis polymerization (ROMP) has evolved into a valuable tool for the polymer chemist. The polymerization is generally mild and well controlled, and a large pool of readily available cyclic olefins (monomers) can be polymerized to nearly any size or shape. Employing the Ru-based initiator 1 (or its more active derivative 2) permits incorporation of high degrees of functionality and affords polymers with novel mechanical, electronic, and more recently biological properties. However, the polydispersity indices (PDIs) of the polymers obtained from initiator 1 are generally broad (between 1.3 and 1.5), which arises from an unfavorable rate of initiation (k_i) relative to propagation (k_p) as well as considerable secondary metathesis (“backbiting”). This creates difficulties when attempting to accurately predict polymer molecular weight a priori or when preparing well-defined block copolymers (where complete initiation is necessary). A recent disclosure from Gibson and co-workers revealed that the initiation efficiency of 1 was enhanced when the PCy_3 ligands were substituted with Cy_2PCH_2Si(CH_3)_3. When the resulting complex (3) was used to initiate the ROMP of norbornene derivatives (similar to 4), the k_i/k_p was found to be 4.35 (up from 0.06 when initiated with 1), and the resulting polymers were nearly monodispersed (PDIs ∼ 1.1). The enhanced initiation was attributed to a combination of the lower basicity and smaller size of Cy_2PCH_2Si(CH_3)_3 (relative to PCy_3) which respectively helped facilitate phosphine dissociation (a key step in Ru-based ROMP, see below) and increase monomer accessibility

Synthesis of cyclic polybutadiene via ring-opening metathesis polymerization: The importance of removing trace linear contaminants

The synthesis of cyclic polybutadienes using ring-opening metathesis polymerization (ROMP) was accomplished. A cyclic Ru alkylidene catalyst, where a terminal ligand was covalently linked to the Ru alkylidene, was used to polymerize either 1,5-cyclooctadiene (COD) or 1,5,9-trans-cis-trans-cyclododecatriene (CDT). Trace amounts of an acyclic impurity, 4-vinylcyclohexene, found in the COD led to samples which were contaminated with linear polymer. In contrast, CDT, which was free of the impurity, afforded pure cyclic polymer. These results provide a convenient method for discerning samples of pure cyclic polymer from those which contain trace to large amounts of linear polymer. Furthermore, they emphasize the need to use monomers that are free of acyclic impurities when preparing cyclic polymers using ROMP

Tandem catalysis: Three mechanistically distinct reactions from a single ruthenium complex

Organometallic catalysts are traditionally designed and optimized to mediate a single reaction. As the number of applications that require combinatorial and other high-speed synthetic protocols increases, it will become desirable for catalysts to mediate multiple, mechanistically distinct transformations directly or upon simple modification. As an example of such a system, we demonstrate the ability of a single component precatalyst to mediate three different reactions to form well-defined block copolymers

Highly efficient syntheses of acetoxy- and hydroxy-terminated telechelic poly(butadiene)s using ruthenium catalysts containing N-heterocyclic ligands

Bis(acetoxy)-tenninated telechelic poly(butadiene) (PBD) with molecular weights controllable up to 3.0 X 10(4) have been prepared via the ring-opening metathesis polymerization (ROMP) of cyclooctadiene when 1,4-bis(acetoxy)-2-butene was included as a chain transfer agent (CTA). The polymerizations were catalyzed by a highly active ruthenium catalyst 1,3-bis(2,4,6-trimethylphenyl)imidazol-2- ylidene)(PCp3)(Cl2Ru = CHCHC(CH3)(2) (Cp = cyclopentyl) (6) with monomer/catalyst ratios as high as 9.8 X 10(4). Removal of the acetoxy groups with sodium hydroxide afforded hydroxy end-terminated telechelic PBD (HTPBD). Examination of the telechelic PBDs revealed an exclusive 1,4-PBD microstructure with a predominately trans geometry (up to 90%). The high activity and stability of 6 permitted a one-step synthesis of HTPBD using the unprotected free alcohol, 2-butene-1,4-diol, as the CTA