Evaluation of the Removal of Organic Sulfur from Coal

As the removal of sulfur from coal prior to combustion acquires more importance in order to meet evermore stringent antipollution regulations, research on the development of methods for the cleaning of coal continues to expand. Reviews are available which describe the various methods for desulfurizing coal (1, 2, 3). The sulfur content in coal is usually a few per cent, but it can range from less than 0.5 per cent to as much as 8 per cent or more. Much of the sulfur is inorganic in nature, occurring in discrete mineral phases; the inorganic sulfur is mostly pyrite with small amounts of sulfates such as gypsum. Part of the sulfur in coal is termed organic sulfur, being intimately bound to the organic coal matrix. The chemical nature of this organic sulfur is not well established. During the desulfurization of coal, some of the coarse inorganic sulfur components can be removed

Prevalence of alkane monooxygenase genes in Arctic and Antarctic hydrocarbon-contaminated and pristine soils

The prevalence of four alkane monooxygenase genotypes (Pseudomonas putida GPo1, Pp alkB; Rhodococcus sp. strain Q15, Rh alkB1 and Rh alkB2; and Acinetobacter sp. strain ADP-1, Ac alkM) in hydrocarbon-contaminated and pristine soils from the Arctic and Antarctica were determined by both culture-independent (PCR hybridization analyses) and culture-dependent (colony hybridization analyses) molecular methods, using oligonucleotide primers and DNA probes specific for each of the alk genotypes. PCR hybridization of total soil community DNA detected the rhodococcal alkB genotypes in most of the contaminated (Rh alkB1, 18/20 soils; Rh alkB2, 13/20) and many pristine soils (Rh alkB1, 9/10 soils; Rh alkB2, 7/10), while Pp alkB was generally detected in the contaminated soils (15/20) but less often in pristine soils (5/10). Ac alkM was rarely detected in the soils (1/30). The colony hybridization technique was used to determine the prevalence of each of the alk genes and determine their relative abundance in culturable cold-adapted (5°C) and mesophilic populations (37°C) from eight of the polar soils. The cold-adapted populations, in general, possessed relatively higher percentages of the Rh alkB genotypes (Rh alkB1, 1.9% (0.55); Rh alkB2, 2.47% (0.89)), followed by the Pp alkB (1.13% (0.50)), and then the Ac alkM (0.53% (0.36)). The Rh alkB1 genotype was clearly more prevalent in culturable cold-adapted bacteria (1.9% (0.55)) than in culturable mesophiles (0.41 (0.55)), suggesting that cold-adapted bacteria are the predominant organisms possessing this genotype. Overall, these results indicated that (i) Acinetobacter spp. are not predominant members of polar alkane degradative microbial communities, (ii) Pseudomonas spp. may become enriched in polar soils following contamination events, and (iii) Rhodococcus spp. may be the predominant alkane-degradative bacteria in both pristine and contaminated polar soil

Improved validation framework and R-package for artificial neural network models

Validation is a critical component of any modelling process. In artificial neural network (ANN) modelling, validation generally consists of the assessment of model predictive performance on an independent validation set (predictive validity). However, this ignores other aspects of model validation considered to be good practice in other areas of environmental modelling, such as residual analysis (replicative validity) and checking the plausibility of the model in relation to a priori system understanding (structural validity). In order to address this shortcoming, a validation framework for ANNs is introduced in this paper that covers all of the above aspects of validation. In addition, the validann R-package is introduced that enables these validation methods to be implemented in a user-friendly and consistent fashion. The benefits of the framework and R-package are demonstrated for two environmental modelling case studies, highlighting the importance of considering replicative and structural validity in addition to predictive validity

Monitoring the survival of a lac-lux marked biosurfactant producing bacterium in soil, and its effect on diesel degradation

NRC publication: Ye

Monitoring the survival of a lac-lux marked biosurfactant producing bacterium in soil, and its effect on diesel degradation

NRC publication: Ye

Iota-carrageenan oligosaccharides as model compounds for structural analysis of iota-carrageenan by 13C-NMR spectroscopy.

International audienc

Characterization of the microbial community structure and the physicochemical properties of produced water and seawater from the Hibernia oil production platform

Hibernia is Canada\u2019s largest offshore oil platform. Produced water is the major waste byproduct discharged into the ocean. In order to evaluate different potential disposal methods, a comprehensive study was performed to determine the impact from the discharge. Microorganisms are typically the first organisms to respond to changes in their environment. The objectives were to characterize the microbial communities and the chemical composition in the produced water and to characterize changes in the seawater bacterial community around the platform. The results from chemical, physicochemical, and microbial analyses revealed that the discharge did not have a detectable effect on the surrounding seawater. The seawater bacterial community was relatively stable, spatially. Unique microorganisms like Thermoanaerobacter were found in the produced water. Thermoanaerobacter-specific q-PCR and nested-PCR primers were designed, and both methods demonstrated that Thermoanaerobacter was present in seawater up to 1000 m from the platform. These methods could be used to track the dispersion of produced water into the surrounding ocean.Peer reviewed: YesNRC publication: Ye

Microbial expression profiles in the rhizosphere of willows depend on soil contamination

The goal of phytoremediation is to use plants to immobilize, extract or degrade organic and inorganic pollutants. In the case of organic contaminants, plants essentially act indirectly through the stimulation of rhizosphere microorganisms. A detailed understanding of the effect plants have on the activities of rhizosphere microorganisms could help optimize phytoremediation systems and enhance their use. In this study, willows were planted in contaminated and non-contaminated soils in a greenhouse, and the active microbial communities and the expression of functional genes in the rhizosphere and bulk soil were compared. Ion Torrent sequencing of 16S rRNA and Illumina sequencing of mRNA were performed. Genes related to carbon and amino-acid uptake and utilization were upregulated in the willow rhizosphere, providing indirect evidence of the compositional content of the root exudates. Related to this increased nutrient input, several microbial taxa showed a significant increase in activity in the rhizosphere. The extent of the rhizosphere stimulation varied markedly with soil contamination levels. The combined selective pressure of contaminants and rhizosphere resulted in higher expression of genes related to competition (antibiotic resistance and biofilm formation) in the contaminated rhizosphere. Genes related to hydrocarbon degradation were generally more expressed in contaminated soils, but the exact complement of genes induced was different for bulk and rhizosphere soils. Together, these results provide an unprecedented view of microbial gene expression in the plant rhizosphere during phytoremediation.The ISME Journal advance online publication, 26 September 2013; doi:10.1038/ismej.2013.163.Peer reviewed: YesNRC publication: Ye

Plant and bird presence strongly influences the microbial communities in soils of Admiralty Bay, Maritime Antarctica

Understanding the environmental factors that shape microbial communities is crucial, especially in extreme environments, like Antarctica. Two main forces were reported to influence Antarctic soil microbes: birds and plants. Both birds and plants are currently undergoing relatively large changes in their distribution and abundance due to global warming. However, we need to clearly understand the relationship between plants, birds and soil microorganisms. We therefore collected rhizosphere and bulk soils from six different sampling sites subjected to different levels of bird influence and colonized by Colobanthus quitensis and Deschampsia antarctica in Admiralty Bay, King George Island, Maritime Antarctic. Microarray and qPCR assays targeting 16S rRNA genes of specific taxa were used to assess microbial community structure, composition and abundance and analyzed with a range of soil physico-chemical parameters. The results indicated significant rhizosphere effects in four out of the six sites, including areas with different levels of bird influence. Acidobacteria were significantly more abundant in soils with little bird influence (low nitrogen) and in bulk soil. In contrast, Actinobacteria were significantly more abundant in the rhizosphere of both plant species. At two of the sampling sites under strong bird influence (penguin colonies), Firmicutes were significantly more abundant in D. antarctica rhizosphere but not in C. quitensis rhizosphere. The Firmicutes were also positively and significantly correlated to the nitrogen concentrations in the soil. We conclude that the microbial communities in Antarctic soils are driven both by bird and plants, and that the effect is taxa-specific. \ua9 2013 Teixeira et al.Peer reviewed: YesNRC publication: Ye

Evaluation of the Removal of Organic Sulfur from Coal

As the removal of sulfur from coal prior to combustion acquires more importance in order to meet evermore stringent antipollution regulations, research on the development of methods for the cleaning of coal continues to expand. Reviews are available which describe the various methods for desulfurizing coal (1, 2, 3). The sulfur content in coal is usually a few per cent, but it can range from less than 0.5 per cent to as much as 8 per cent or more. Much of the sulfur is inorganic in nature, occurring in discrete mineral phases; the inorganic sulfur is mostly pyrite with small amounts of sulfates such as gypsum. Part of the sulfur in coal is termed organic sulfur, being intimately bound to the organic coal matrix. The chemical nature of this organic sulfur is not well established. During the desulfurization of coal, some of the coarse inorganic sulfur components can be removed.Reprinted (adapted) with permission from New Approaches in Coal Chemistry, Chapter 23, pp 401–414. Copyright 1981 American Chemical Society.</p