A framework for modelling, simulation and control of integrated urban wastewater system

This paper is concerned with the integrated modelling, and control of urban wastewater systems (UWS) comprising the wastewater treatment plants (WTP), receiving waters (river) and the sewer networks. A unified framework is developed and simple models are used and implemented in Matlab/Simulink to produce a toolbox. Novel linear and nonlinear control structures are then proposed to design integrated control systems to improve the river water quality. A case study is simulated and simulation results are presented to demonstrate the possible improvement that can be achieved using a holistic integrated control system approac

Data Portraits and Intermediary Topics: Encouraging Exploration of Politically Diverse Profiles

In micro-blogging platforms, people connect and interact with others. However, due to cognitive biases, they tend to interact with like-minded people and read agreeable information only. Many efforts to make people connect with those who think differently have not worked well. In this paper, we hypothesize, first, that previous approaches have not worked because they have been direct -- they have tried to explicitly connect people with those having opposing views on sensitive issues. Second, that neither recommendation or presentation of information by themselves are enough to encourage behavioral change. We propose a platform that mixes a recommender algorithm and a visualization-based user interface to explore recommendations. It recommends politically diverse profiles in terms of distance of latent topics, and displays those recommendations in a visual representation of each user's personal content. We performed an "in the wild" evaluation of this platform, and found that people explored more recommendations when using a biased algorithm instead of ours. In line with our hypothesis, we also found that the mixture of our recommender algorithm and our user interface, allowed politically interested users to exhibit an unbiased exploration of the recommended profiles. Finally, our results contribute insights in two aspects: first, which individual differences are important when designing platforms aimed at behavioral change; and second, which algorithms and user interfaces should be mixed to help users avoid cognitive mechanisms that lead to biased behavior.Comment: 12 pages, 7 figures. To be presented at ACM Intelligent User Interfaces 201

Smith-Purcell radiation emission in aperiodic arrays

We study the Smith-Purcell light emission produced by electrons moving parallel to linear aperiodic particle arrays. This constitutes a generalization of this type of phenomenon from periodic to aperiodic structures. As in the periodic case, the emission is found to exhibit intense features in its angular and frequency distributions, associated with the condition of constructive interference between the contributions arising from different particles in the array. This condition can also be expressed in terms of momentum conservation involving reciprocal wave-vector transfers from the array. We consider two examples of quasiperiodic and hyperuniform aperiodic arrays that allow us to illustrate this idea. Our study provides insight into the interaction of fast electrons with aperiodic arrays characterized by strong features in reciprocal space, which dominate the electron-array coupling.Postprint (published version

Experimental Characterization of a 10uW 55um-pitch FPN-Compensated CMOS Digital Pixel Sensor for X-ray Imagers

Peer reviewe

Discovering Polarized Communities in Signed Networks

Signed networks contain edge annotations to indicate whether each interaction is friendly (positive edge) or antagonistic (negative edge). The model is simple but powerful and it can capture novel and interesting structural properties of real-world phenomena. The analysis of signed networks has many applications from modeling discussions in social media, to mining user reviews, and to recommending products in e-commerce sites. In this paper we consider the problem of discovering polarized communities in signed networks. In particular, we search for two communities (subsets of the network vertices) where within communities there are mostly positive edges while across communities there are mostly negative edges. We formulate this novel problem as a "discrete eigenvector" problem, which we show to be NP-hard. We then develop two intuitive spectral algorithms: one deterministic, and one randomized with quality guarantee $\sqrt{n}$ (where $n$ is the number of vertices in the graph), tight up to constant factors. We validate our algorithms against non-trivial baselines on real-world signed networks. Our experiments confirm that our algorithms produce higher quality solutions, are much faster and can scale to much larger networks than the baselines, and are able to detect ground-truth polarized communities

Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process

Pathogens modulate plant cell structure and function by secreting effectors into host tissues. Effectors typically function by associating with host molecules and modulating their activities. This study aimed to identify the host processes targeted by the RXLR class of host-translocated effectors of the potato blight pathogen Phytophthora infestans. To this end, we performed an in planta protein-protein interaction screen by transiently expressing P. infestans RXLR effectors in Nicotiana benthamiana leaves followed by co-immunoprecipitation and liquid chromatography tandem mass spectrometry. This screen generated an effector-host protein interactome matrix of 59 P. infestans RXLR effectors x 586 N. benthamiana proteins. Classification of the host interactors into putative functional categories revealed over 35 biological processes possibly targeted by P. infestans. We further characterized the PexRD12/31 family of RXLR-WY effectors, which associate and co-localize with components of the vesicle trafficking machinery. One member of this family, PexRD31, increased the number of FYVE positive vesicles in N. benthamiana cells. FYVE positive vesicles also accumulated in leaf cells near P. infestans hyphae, indicating that the pathogen may enhance endosomal trafficking during infection. This interactome data set will serve as a useful resource for functional studies of P. infestans effectors and of effector-targeted host processes

Plant-expressed virus-like particles reveal the intricate maturation process of a eukaryotic virus.

Many virus capsids undergo exquisitely choreographed maturation processes in their host cells to produce infectious virions, and these remain poorly understood. As a tool for studying virus maturation, we transiently expressed the capsid protein of the insect virus Nudaurelia capensis omega virus (NωV) in Nicotiana benthamiana and were able to purify both immature procapsids and mature capsids from infiltrated leaves by varying the expression time. Cryo-EM analysis of the plant-produced procapsids and mature capsids to 6.6 Å and 2.7 Å resolution, respectively, reveals that in addition to large scale rigid body motions, internal regions of the subunits are extensively remodelled during maturation, creating the active site required for autocatalytic cleavage and infectivity. The mature particles are biologically active in terms of their ability to lyse membranes and have a structure that is essentially identical to authentic virus. The ability to faithfully recapitulate and visualize a complex maturation process in plants, including the autocatalytic cleavage of the capsid protein, has revealed a ~30 Å translation-rotation of the subunits during maturation as well as conformational rearrangements in the N and C-terminal helical regions of each subunit

El cobre de Linares (Jaén) como elemento vinculado al comercio fenicio en El Calvari de El Molar (Tarragona)

The settlement and the necropolis of El Calvari (El Molar, Tarragona), dated between the end of the Late Bronze Age and the Early Iron Age, provided various copper-based objects and melting wastes. The archaeological site is located in a mining district, the Molar-Bellmunt-Falset (MBF) area, which presents rich deposits mainly of non-argentiferous lead and copper. Lead isotope analyses performed on some lead-based materials recovered from El Calvari show that these mines were already being exploited at this time. However, lead isotope analyses of the copper-based metals indicate that neither the ones from the site nor those from the necropolis can be related to local mineral resources. Indeed, a great part of these items originates from the Linares mines (Jaén) and, in a smaller part, from mines in the Almería province. In this paper we will discuss arguments supporting the possibility of import of ingots or of finished objects as part of the Phoenician trade in northeastern Iberia

A Replicating Viral Vector Greatly Enhances Accumulation of Helical Virus-Like Particles in Plants

The production of plant helical virus-like particles (VLPs) via plant-based expression has been problematic with previous studies suggesting that an RNA scaffold may be necessary for their efficient production. To examine this, we compared the accumulation of VLPs from two potexviruses, papaya mosaic virus and alternanthera mosaic virus (AltMV), when the coat proteins were expressed from a replicating potato virus X- based vector (pEff) and a non-replicating vector (pEAQ-HT). Significantly greater quantities of VLPs could be purified when pEff was used. The pEff system was also very efficient at producing VLPs of helical viruses from different virus families. Examination of the RNA content of AltMV and tobacco mosaic virus VLPs produced from pEff revealed the presence of vector-derived RNA sequences, suggesting that the replicating RNA acts as a scaffold for VLP assembly. Cryo-EM analysis of the AltMV VLPs showed they had a structure very similar to that of authentic potexvirus particles. Thus, we conclude that vectors generating replicating forms of RNA, such as pEff, are very efficient for producing helical VLPs