10 research outputs found
Development of predator defences in fishes
A variety of development characteristics, morphological, behavioural, and experiential, contribute to the extreme vulnerability of young fishes to predation. The influence of these characteristics is complicated by the fact that the larval period is one of substantial and rapid change. Yet survival is the ultimate goal;-it is only by reaching maturity that individual fish have the opportunity to reproduce. With such high stakes it is not surprising that predator defences are of major importance during all phases of life. Developmental constraints may limit the defensive options for young fishes. Avoidance behaviours, which reduce the likelihood of encountering a predator or of being attacked by it, are particulaly evident in the youngest stages. Here size, coloration and dispersal are used to help elude the predator's attention. As fishes grow and acquire greater morphological and behavioural sophistication, there is more scope for predator evasion when avoidance fails. Older fishes are increasingly able to respond to external stimuli and can detect and react to predators or join conspecifics in common defence (schooling). Behavioural development is not simply a consequence of growth and the concomitant physical alterations of the body; it is also mediated by experience that comes through interaction with the physical and biotic environment. Predispositions to respond to experience may be a product of evolutionary history. Although mortality rates decline markedly with development and maturity, changes in size or behaviour can render fishes vulnerable to new suites of predators. Effective predator avoidance can compromise other activities, such as foraging, and individuals may be forced to reconcile conflicting demands. Developmental niche shifts that occur, for example, when certain size classes take refuge in less profitable feeding habitats, represent one such trade-off. Niche shifts may also be mediated by the influence of the programme for morphological development on sensory or behavioural capabilities. In addition to all of these developmental consderations, natural variations in environmental conditions - such as temperature, photoperiod, predator density and variety, and presence of alternative prey - represent additional challenges to predator defences during the rite of passage from birth to reproduction.</p
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The chromatin landscape of healthy and injured cell types in the human kidney
There is a need to define regions of gene activation or repression that control human kidney cells in states of health, injury, and repair to understand the molecular pathogenesis of kidney disease and design therapeutic strategies. Comprehensive integration of gene expression with epigenetic features that define regulatory elements remains a significant challenge. We measure dual single nucleus RNA expression and chromatin accessibility, DNA methylation, and H3K27ac, H3K4me1, H3K4me3, and H3K27me3 histone modifications to decipher the chromatin landscape and gene regulation of the kidney in reference and adaptive injury states. We establish a spatially-anchored epigenomic atlas to define the kidney’s active, silent, and regulatory accessible chromatin regions across the genome. Using this atlas, we note distinct control of adaptive injury in different epithelial cell types. A proximal tubule cell transcription factor network of ELF3, KLF6, and KLF10 regulates the transition between health and injury, while in thick ascending limb cells this transition is regulated by NR2F1. Further, combined perturbation of ELF3, KLF6, and KLF10 distinguishes two adaptive proximal tubular cell subtypes, one of which manifested a repair trajectory after knockout. This atlas will serve as a foundation to facilitate targeted cell-specific therapeutics by reprogramming gene regulatory networks. © 2024, The Author(s).Open access journalThis item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at [email protected]