Enabling EASEY deployment of containerized applications for future HPC systems

The upcoming exascale era will push the changes in computing architecture from classical CPU-based systems in hybrid GPU-heavy systems with much higher levels of complexity. While such clusters are expected to improve the performance of certain optimized HPC applications, it will also increase the difficulties for those users who have yet to adapt their codes or are starting from scratch with new programming paradigms. Since there are still no comprehensive automatic assistance mechanisms to enhance application performance on such systems, we are proposing a support framework for future HPC architectures, called EASEY (Enable exASclae for EverYone). The solution builds on a layered software architecture, which offers different mechanisms on each layer for different tasks of tuning. This enables users to adjust the parameters on each of the layers, thereby enhancing specific characteristics of their codes. We introduce the framework with a Charliecloud-based solution, showcasing the LULESH benchmark on the upper layers of our framework. Our approach can automatically deploy optimized container computations with negligible overhead and at the same time reduce the time a scientist needs to spent on manual job submission configurations.Comment: International Conference on Computational Science ICCS2020, 13 page

Metamagnetism in the XXZ model with next-to-nearest-neighbor coupling

We investigate groundstate energies and magnetization curves in the one dimensional XXZ-model with next to nearest neighbour coupling $\alpha>0$ and anisotropy $\Delta$ ($-1 \le \Delta \le 1$) at T=0. In between the familiar ferro- and antiferromagnetic phase we find a transition region -- called metamagnetic phase -- where the magnetization curve is discontinuous at a critical field $B_c(\alpha,\Delta)$.Comment: LaTeX file (text) + 5 PS files (5 figures

Using Enzyme-Based Biosensors to Measure Tonic and Phasic Glutamate in Alzheimer\u27s Mouse Models

Neurotransmitter disruption is often a key component of diseases of the central nervous system (CNS), playing a role in the pathology underlying Alzheimer\u27s disease, Parkinson\u27s disease, depression, and anxiety. Traditionally, microdialysis has been the most common (lauded) technique to examine neurotransmitter changes that occur in these disorders. But because microdialysis has the ability to measure slow 1-20 minute changes across large areas of tissue, it has the disadvantage of invasiveness, potentially destroying intrinsic connections within the brain and a slow sampling capability. A relatively newer technique, the microelectrode array (MEA), has numerous advantages for measuring specific neurotransmitter changes within discrete brain regions as they occur, making for a spatially and temporally precise approach. In addition, using MEAs is minimally invasive, allowing for measurement of neurotransmitter alterations in vivo. In our laboratory, we have been specifically interested in changes in the neurotransmitter, glutamate, related to Alzheimer\u27s disease pathology. As such, the method described here has been used to assess potential hippocampal disruptions in glutamate in a transgenic mouse model of Alzheimer\u27s disease. Briefly, the method used involves coating a multi-site microelectrode with an enzyme very selective for the neurotransmitter of interest and using self-referencing sites to subtract out background noise and interferents. After plating and calibration, the MEA can be constructed with a micropipette and lowered into the brain region of interest using a stereotaxic device. Here, the method described involves anesthetizing rTg(TauP301L)4510 mice and using a stereotaxic device to precisely target sub-regions (DG, CA1, and CA3) of the hippocampus

Perioperative morbidity of different operative approaches in early cervical carcinoma: a systematic review and meta-analysis comparing minimally invasive versus open radical hysterectomy

Purpose: Radical hysterectomy and pelvic lymphadenectomy is the standard treatment for early cervical cancer. Studies have shown superior oncological outcome for open versus minimal invasive surgery, but peri- and postoperative complication rates were shown vice versa. This meta-analysis evaluates the peri- and postoperative morbidities and complications of robotic and laparoscopic radical hysterectomy compared to open surgery. Methods: Embase and Ovid-Medline databases were systematically searched in June 2020 for studies comparing robotic, laparoscopic and open radical hysterectomy. There was no limitation in publication year. Inclusion criteria were set analogue to the LACC trial. Subgroup analyses were performed regarding the operative technique, the study design and the date of publication for the endpoints intra- and postoperative morbidity, estimated blood loss, hospital stay and operation time. Results: 27 studies fulfilled the inclusion criteria. Five prospective, randomized-control trials were included. Meta-analysis showed no significant difference between robotic radical hysterectomy (RH) and laparoscopic hysterectomy (LH) concerning intra- and perioperative complications. Operation time was longer in both RH (mean difference 44.79 min [95% CI 38.16; 51.42]), and LH (mean difference 20.96 min; [95% CI − 1.30; 43.22]) than in open hysterectomy (AH) but did not lead to a rise of intra- and postoperative complications. Intraoperative morbidity was lower in LH than in AH (RR 0.90 [0.80; 1.02]) as well as in RH compared to AH (0.54 [0.33; 0.88]). Intraoperative morbidity showed no difference between LH and RH (RR 1.29 [0.23; 7.29]). Postoperative morbidity was not different in any approach. Estimated blood loss was lower in both LH (mean difference − 114.34 [− 122.97; − 105.71]) and RH (mean difference − 287.14 [− 392.99; − 181.28]) compared to AH, respectively. Duration of hospital stay was shorter for LH (mean difference − 3.06 [− 3.28; − 2.83]) and RH (mean difference − 3.77 [− 5.10; − 2.44]) compared to AH. Conclusion: Minimally invasive radical hysterectomy appears to be associated with reduced intraoperative morbidity and blood loss and improved reconvalescence after surgery. Besides oncological and surgical factors these results should be considered when counseling patients for radical hysterectomy and underscore the need for new randomized trials. © 2021, The Author(s)

From Labyrinthine Patterns to Spiral Turbulence

A new mechanism for spiral vortex nucleation in nongradient reaction diffusion systems is proposed. It involves two key ingredients: An Ising-Bloch type front bifurcation and an instability of a planar front to transverse perturbations. Vortex nucleation by this mechanism plays an important role in inducing a transition from labyrinthine patterns to spiral turbulence. PACS numbers: 05.45.+b, 82.20.MjComment: 4 pages uuencoded compressed postscrip

The prescribed mean curvature equation in weakly regular domains

We show that the characterization of existence and uniqueness up to vertical translations of solutions to the prescribed mean curvature equation, originally proved by Giusti in the smooth case, holds true for domains satisfying very mild regularity assumptions. Our results apply in particular to the non-parametric solutions of the capillary problem for perfectly wetting fluids in zero gravity. Among the essential tools used in the proofs, we mention a \textit{generalized Gauss-Green theorem} based on the construction of the weak normal trace of a vector field with bounded divergence, in the spirit of classical results due to Anzellotti, and a \textit{weak Young's law} for $(\Lambda,r_{0})$-minimizers of the perimeter.Comment: 23 pages, 1 figure --- The results on the weak normal trace of vector fields have been now extended and moved in a self-contained paper available at: arXiv:1708.0139

Dynamical Structure Factors of the S=1/2 Bond-Alternating Spin Chain with a Next-Nearest-Neighbor Interaction in Magnetic Fields

The dynamical structure factor of the S=1/2 bond-alternating spin chain with a next-nearest-neighbor interaction in magnetic field is investigated using the continued fraction method based on the Lanczos algorithm. When the plateau exists on the magnetization curve, the longitudinal dynamical structure factor shows a large intensity with a periodic dispersion relation, while the transverse one shows a large intensity with an almost dispersionless mode. The periodicity and the amplitude of the dispersion relation in the longitudinal dynamical structure factor are sensitive to the coupling constants. The dynamical structure factor of the S=1/2 two-leg ladder in magnetic field is also calculated in the strong interchain-coupling regime. The dynamical structure factor shows gapless or gapful behavior depending on the wave vector along the rung.Comment: 8 pages, 4 figures, to appear in Journal of the Physical Society of Japan, vol. 69, no. 10, (2000

Conclusive quantum steering with superconducting transition edge sensors

Quantum steering allows two parties to verify shared entanglement even if one measurement device is untrusted. A conclusive demonstration of steering through the violation of a steering inequality is of considerable fundamental interest and opens up applications in quantum communication. To date all experimental tests with single photon states have relied on post-selection, allowing untrusted devices to cheat by hiding unfavourable events in losses. Here we close this "detection loophole" by combining a highly efficient source of entangled photon pairs with superconducting transition edge sensors. We achieve an unprecedented ~62% conditional detection efficiency of entangled photons and violate a steering inequality with the minimal number of measurement settings by 48 standard deviations. Our results provide a clear path to practical applications of steering and to a photonic loophole-free Bell test.Comment: Preprint of 7 pages, 3 figures; the definitive version is published in Nature Communications, see below. Also, see related experimental work by A. J. Bennet et al., arXiv:1111.0739 and B. Wittmann et al., arXiv:1111.076

Magnetization jump in the XXZ chain with next-nearest-neighbor exchange

We study the dependence of the magnetization M with magnetic field B at zero temperature in the spin-1/2 XXZ chain with nearest-neighbor (NN) J1 and next-NN J2 exchange interactions, with anisotropies Delta1 and Delta2 respectively. The region of parameters for which a jump in M(B) exists is studied using numerical diagonalization, and analytical results for two magnons on a ferromagnetic background in the thermodynamic limit. We find a line in the parameter space (J2/J1, Delta1/J1, Delta2/J2) (determined by two simple equations) at which the ground state is highly degenerate. M(B) has a jump near this line, and at or near the isotropic case with ferromagnetic J1 and antiferromagnetic J2, with |J2/J1| near 1/4. These results are relevant for some systems containing CuO chains with edge-sharing CuO4 units.Comment: 9 pages, 8 figures, submitted to Phys. Rev.