56 research outputs found
TADPOL: A 1.3 mm Survey of Dust Polarization in Star-forming Cores and Regions
We present {\lambda}1.3 mm CARMA observations of dust polarization toward 30
star-forming cores and 8 star-forming regions from the TADPOL survey. We show
maps of all sources, and compare the ~2.5" resolution TADPOL maps with ~20"
resolution polarization maps from single-dish submillimeter telescopes. Here we
do not attempt to interpret the detailed B-field morphology of each object.
Rather, we use average B-field orientations to derive conclusions in a
statistical sense from the ensemble of sources, bearing in mind that these
average orientations can be quite uncertain. We discuss three main findings:
(1) A subset of the sources have consistent magnetic field (B-field)
orientations between large (~20") and small (~2.5") scales. Those same sources
also tend to have higher fractional polarizations than the sources with
inconsistent large-to-small-scale fields. We interpret this to mean that in at
least some cases B-fields play a role in regulating the infall of material all
the way down to the ~1000 AU scales of protostellar envelopes. (2) Outflows
appear to be randomly aligned with B-fields; although, in sources with low
polarization fractions there is a hint that outflows are preferentially
perpendicular to small-scale B-fields, which suggests that in these sources the
fields have been wrapped up by envelope rotation. (3) Finally, even at ~2.5"
resolution we see the so-called "polarization hole" effect, where the
fractional polarization drops significantly near the total intensity peak. All
data are publicly available in the electronic edition of this article.Comment: 53 pages, 37 figures -- main body (13 pp., 3 figures), source maps
(32 pp., 34 figures), source descriptions (8 pp.). Accepted by the
Astrophysical Journal Supplemen
Molecular analysis of archival diagnostic prostate cancer biopsies identifies genomic similarities in cases with progression post-radiotherapy, and those with de novo metastatic disease
Purpose It is important to identify molecular features that improve prostate cancer (PCa) risk stratification before radical treatment with curative intent. Molecular analysis of historical diagnostic formalin-fixed paraffin-embedded (FFPE) prostate biopsies from cohorts with post-radiotherapy (RT) long-term clinical follow-up has been limited. Utilizing parallel sequencing modalities, we performed a proof-of-principle sequencing analysis of historical diagnostic FFPE prostate biopsies. We compared patients with i) stable PCa post-primary or salvage RT (sPCa), ii) progressing PCa post-RT (pPCa), and iii) de novo metastatic PCa (mPCa).
Experimental Design A cohort of 19 patients with diagnostic prostate biopsies (n=6 sPCa, n=5 pPCa, n=8 mPCa) and mean 4 years 10 months follow-up (diagnosed 2009-2016) underwent nucleic acid extraction from demarcated malignancy. Samples underwent 3’RNA sequencing (3’RNAseq) (n=19), nanoString analysis (n=12) and Illumina 850k methylation (n=8) sequencing. Bioinformatic analysis was performed to coherently identify differentially expressed genes (DEGs) and methylated genomic regions (MGRs).
Results 18 of 19 samples provided useable 3’RNAseq data. Principal Component Analysis (PCA) demonstrated similar expression profiles between pPCa and mPCa cases, versus sPCa. Coherently differentially methylated probes between these groups identified ∼600 differentially MGRs. The top 50 genes with increased expression in pPCa patients were associated with reduced progression-free survival post-RT (p<0.0001) in an external cohort.
Conclusions 3’RNAseq, nanoString and 850K-methylation analyses are each achievable from historical FFPE diagnostic pre-treatment prostate biopsies, unlocking the potential to utilize large cohorts of historic clinical samples. Profiling similarities between individuals with pPCa and mPCa suggests biological similarities and historical radiological staging limitations, which warrant further investigation
1.3 mm Wavelength VLBI of Sagittarius A*: Detection of Time-Variable Emission on Event Horizon Scales
Sagittarius A*, the ~4 x 10^6 solar mass black hole candidate at the Galactic
Center, can be studied on Schwarzschild radius scales with (sub)millimeter
wavelength Very Long Baseline Interferometry (VLBI). We report on 1.3 mm
wavelength observations of Sgr A* using a VLBI array consisting of the JCMT on
Mauna Kea, the ARO/SMT on Mt. Graham in Arizona, and two telescopes of the
CARMA array at Cedar Flat in California. Both Sgr A* and the quasar calibrator
1924-292 were observed over three consecutive nights, and both sources were
clearly detected on all baselines. For the first time, we are able to extract
1.3 mm VLBI interferometer phase information on Sgr A* through measurement of
closure phase on the triangle of baselines. On the third night of observing,
the correlated flux density of Sgr A* on all VLBI baselines increased relative
to the first two nights, providing strong evidence for time-variable change on
scales of a few Schwarzschild radii. These results suggest that future VLBI
observations with greater sensitivity and additional baselines will play a
valuable role in determining the structure of emission near the event horizon
of Sgr A*.Comment: 8 pages, submitted to ApJ
First Results from COPSS: The CO Power Spectrum Survey
We present constraints on the abundance of carbon monoxide in the early universe from the CO Power Spectrum Survey. We utilize a data set collected between 2005 and 2008 using the Sunyaev–Zel'dovich Array (SZA), which was previously used to measure arcminute-scale fluctuations of the cosmic microwave background. This data set features observations of 44 fields, covering an effective area of 1.7 square degrees, over a frequency range of 27–35 GHz. Using the technique of intensity mapping, we are able to probe the CO(1–0) transition, with sensitivity to spatial modes between k = 0.5–2 h Mpc^(−1) over a range in redshift of z = 2.3–3.3, spanning a comoving volume of 3.6 × 10^6 h^(−3) Mpc^3. We demonstrate our ability to mitigate foregrounds, and present estimates of the impact of continuum sources on our measurement. We constrain the CO power spectrum to P_(CO) < 2.6 × 10^4 μK^2 (h^(−1) Mpc)^3, or Δ^2_(CO)(k = 1 h Mpc^(−1)) < 1.3 × 10^3 μK^2, at 95% confidence. This limit resides near optimistic predictions for the CO power spectrum. Under the assumption that CO emission is proportional to halo mass during bursts of active star formation, this corresponds to a limit on the ratio of CO(1–0) luminosity to host halo mass of A_(CO) < 1.2 × 10^(−5) L⊙_ M_⊙^(−1). Further assuming a Milky Way-like conversion factor between CO luminosity and molecular gas mass (α_(CO) = 4.3 M_⊙ (K km s^(−1) pc^(−2))^(−1)), we constrain the global density of molecular gas to ρ_(z~3) (M_H_2) ⩽ 2.8 x 10^8 M_☉ Mpc^(-3)
Detection of intrinsic source structure at ~3 Schwarzschild radii with Millimeter-VLBI observations of SAGITTARIUS A*
We report results from very long baseline interferometric (VLBI) observations
of the supermassive black hole in the Galactic center, Sgr A*, at 1.3 mm (230
GHz). The observations were performed in 2013 March using six VLBI stations in
Hawaii, California, Arizona, and Chile. Compared to earlier observations, the
addition of the APEX telescope in Chile almost doubles the longest baseline
length in the array, provides additional {\it uv} coverage in the N-S
direction, and leads to a spatial resolution of 30 as (3
Schwarzschild radii) for Sgr A*. The source is detected even at the longest
baselines with visibility amplitudes of 4-13% of the total flux density.
We argue that such flux densities cannot result from interstellar refractive
scattering alone, but indicate the presence of compact intrinsic source
structure on scales of 3 Schwarzschild radii. The measured nonzero
closure phases rule out point-symmetric emission. We discuss our results in the
context of simple geometric models that capture the basic characteristics and
brightness distributions of disk- and jet-dominated models and show that both
can reproduce the observed data. Common to these models are the brightness
asymmetry, the orientation, and characteristic sizes, which are comparable to
the expected size of the black hole shadow. Future 1.3 mm VLBI observations
with an expanded array and better sensitivity will allow a more detailed
imaging of the horizon-scale structure and bear the potential for a deep
insight into the physical processes at the black hole boundary.Comment: 11 pages, 5 figures, accepted to Ap
Long-Term Opioid Contract Use for Chronic Pain Management in Primary Care Practice. A Five Year Experience
BACKGROUND: The use of opioid medications to manage chronic pain is complex and challenging, especially in primary care settings. Medication contracts are increasingly being used to monitor patient adherence, but little is known about the long-term outcomes of such contracts. OBJECTIVE: To describe the long-term outcomes of a medication contract agreement for patients receiving opioid medications in a primary care setting. DESIGN: Retrospective cohort study. SUBJECTS: All patients placed on a contract for opioid medication between 1998 and 2003 in an academic General Internal Medicine teaching clinic. MEASUREMENTS: Demographics, diagnoses, opiates prescribed, urine drug screens, and reasons for contract cancellation were recorded. The association of physician contract cancellation with patient factors and medication types were examined using the Chi-square test and multivariate logistic regression. RESULTS: A total of 330 patients constituting 4% of the clinic population were placed on contracts during the study period. Seventy percent were on indigent care programs. The majority had low back pain (38%) or fibromyalgia (23%). Contracts were discontinued in 37%. Only 17% were cancelled for substance abuse and noncompliance. Twenty percent discontinued contract voluntarily. Urine toxicology screens were obtained in 42% of patients of whom 38% were positive for illicit substances. CONCLUSIONS: Over 60% of patients adhered to the contract agreement for opioids with a median follow-up of 22.5 months. Our experience provides insight into establishing a systematic approach to opioid administration and monitoring in primary care practices. A more structured drug testing strategy is needed to identify nonadherent patients
Event-horizon-scale structure in the supermassive black hole candidate at the Galactic Centre
The cores of most galaxies are thought to harbour supermassive black holes,
which power galactic nuclei by converting the gravitational energy of accreting
matter into radiation (ref 1). Sagittarius A*, the compact source of radio,
infrared and X-ray emission at the centre of the Milky Way, is the closest
example of this phenomenon, with an estimated black hole mass that is 4 million
times that of the Sun (refs. 2,3). A long-standing astronomical goal is to
resolve structures in the innermost accretion flow surrounding Sgr A* where
strong gravitational fields will distort the appearance of radiation emitted
near the black hole. Radio observations at wavelengths of 3.5 mm and 7 mm have
detected intrinsic structure in Sgr A*, but the spatial resolution of
observations at these wavelengths is limited by interstellar scattering (refs.
4-7). Here we report observations at a wavelength of 1.3 mm that set a size of
37 (+16, -10; 3-sigma) microarcseconds on the intrinsic diameter of Sgr A*.
This is less than the expected apparent size of the event horizon of the
presumed black hole, suggesting that the bulk of SgrA* emission may not be not
centred on the black hole, but arises in the surrounding accretion flow.Comment: 12 pages including 2 figure
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