Correction to: Cluster identification, selection, and description in Cluster randomized crossover trials: the PREP-IT trials

An amendment to this paper has been published and can be accessed via the original article

Porcine colonization of the Americas: a 60k SNP story

The pig, Sus scrofa, is a foreign species to the American continent. Although pigs originally introduced in the Americas should be related to those from the Iberian Peninsula and Canary islands, the phylogeny of current creole pigs that now populate the continent is likely to be very complex. Because of the extreme climates that America harbors, these populations also provide a unique example of a fast evolutionary phenomenon of adaptation. Here, we provide a genome wide study of these issues by genotyping, with a 60k SNP chip, 206 village pigs sampled across 14 countries and 183 pigs from outgroup breeds that are potential founders of the American populations, including wild boar, Iberian, international and Chinese breeds. Results show that American village pigs are primarily of European ancestry, although the observed genetic landscape is that of a complex conglomerate. There was no correlation between genetic and geographical distances, neither continent wide nor when analyzing specific areas. Most populations showed a clear admixed structure where the Iberian pig was not necessarily the main component, illustrating how international breeds, but also Chinese pigs, have contributed to extant genetic composition of American village pigs. We also observe that many genes related to the cardiovascular system show an increased differentiation between altiplano and genetically related pigs living near sea level.WBP is funded by COLCIENCIAS (Francisco José de Caldas fellowship 497/2009, Colombia), CAS thanks grants from CAPES and EMBRAPA (Brazil), YRC is recipient of a PhD studentship from MICINN (Spain, ref. AP2008-01450), AEC is recipient of a PhD studentship from MICINN (Spain). Work funded by Consolider CSD2007-00036 ‘Center for Research in Agrigenomics’ and AGL2010-14822 grants (Spain) to MPE, EU SABRE project FOOD-CT-2006-01625, USDA project 2007-04315 (USA), Facultad de Ciencias Agrarias, San Pedro (UNA), Unión de Gremios de la Producción (UGP) and Empresa San Rafael Agricola y Ganadera SRL (Paraguay), Universidad Técnica de Oruro (Bolivia), Programa de Conservación de los Bancos de Germoplasma, Instituto Colombiano Agropecuario (grant 048-2011) and Ministerio de Agricultura y Desarrollo Rural (Colombia), and Centro de Validación de Tecnologías Agropecuarias (CEDEVA, Formosa, Argentina).Peer reviewe

Two hundred years of environmental change in picos de Europa National Park inferred from sediments of Lago Enol, northern Iberia

We present a study of two short sediment cores recovered from Lago Enol, in the Picos de Europa National Park, Cantabrian Mountains, northern Iberia. We inferred past climate conditions and anthropogenic impacts using geochemical and biological (pollen and diatoms) variables in the dated sequences, in conjunction with temperature and precipitation data collected since 1871 at meteorological stations in the region. The record provides evidence of environmental changes during the last 200 years. At the end of the Little Ice Age (*1800–1875 AD) the region was characterized by an open landscape. Longterm use of the area for mixed livestock grazing in the mountains, and cultivation of rye during the nineteenth century, contributed to the expansion of grassland at the expense of forest. Warmer temperatures since the end of the nineteenth century are inferred from a change in diatom assemblages and development of the local forest. Socioeconomic transformation during the twentieth century, such as livestock changes related to dairy specialization, planting of non-native trees, mining activities, and management of the national park since its creation in 1918, caused profound changes in the catchment and in the lake ecology. The last several decades (*1970–2007 AD) of the Lago Enol sediment record are strikingly different from previous periods, indicating lower runoff and increasing lake productivity, particularly since AD 2000. Today, the large number of tourists who visit the area cause substantial impacts on this ecosystem

Implementing stakeholder engagement to explore alternative models of consent: An example from the PREP-IT trials

Introduction: Cluster randomized crossover trials are often faced with a dilemma when selecting an optimal model of consent, as the traditional model of obtaining informed consent from participant's before initiating any trial related activities may not be suitable. We describe our experience of engaging patient advisors to identify an optimal model of consent for the PREP-IT trials. This paper also examines surrogate measures of success for the selected model of consent. Methods: The PREP-IT program consists of two multi-center cluster randomized crossover trials that engaged patient advisors to determine an optimal model of consent. Patient advisors and stakeholders met regularly and reached consensus on decisions related to the trial design including the model for consent. Patient advisors provided valuable insight on how key decisions on trial design and conduct would be received by participants and the impact these decisions will have. Results: Patient advisors, together with stakeholders, reviewed the pros and cons and the requirements for the traditional model of consent, deferred consent, and waiver of consent. Collectively, they agreed upon a deferred consent model, in which patients may be approached for consent after their fracture surgery and prior to data collection. The consent rate in PREP-IT is 80.7%, and 0.67% of participants have withdrawn consent for participation. Discussion: Involvement of patient advisors in the development of an optimal model of consent has been successful. Engagement of patient advisors is recommended for other large trials where the traditional model of consent may not be optimal