dPORE-miRNA: Polymorphic Regulation of MicroRNA Genes

Background: MicroRNAs (miRNAs) are short non-coding RNA molecules that act as post-transcriptional regulators and affect the regulation of protein-coding genes. Mostly transcribed by PolII, miRNA genes are regulated at the transcriptional level similarly to protein-coding genes. In this study we focus on human miRNAs. These miRNAs are involved in a variety of pathways and can affect many diseases. Our interest is on possible deregulation of the transcription initiation of the miRNA encoding genes, which is facilitated by variations in the genomic sequence of transcriptional control regions (promoters). Methodology: Our aim is to provide an online resource to facilitate the investigation of the potential effects of single nucleotide polymorphisms (SNPs) on miRNA gene regulation. We analyzed SNPs overlapped with predicted transcription factor binding sites (TFBSs) in promoters of miRNA genes. We also accounted for the creation of novel TFBSs due to polymorphisms not present in the reference genome. The resulting changes in the original TFBSs and potential creation of new TFBSs were incorporated into the Dragon Database of Polymorphic Regulation of miRNA genes (dPORE-miRNA). Conclusions: The dPORE-miRNA database enables researchers to explore potential effects of SNPs on the regulation of miRNAs. dPORE-miRNA can be interrogated with regards to: a/miRNAs (their targets, or involvement in diseases, or biological pathways), b/SNPs, or c/transcription factors. dPORE-miRNA can be accessed a

Flea Diversity as an Element for Persistence of Plague Bacteria in an East African Plague Focus

Plague is a flea-borne rodent-associated zoonotic disease that is caused by Yersinia pestis and characterized by long quiescent periods punctuated by rapidly spreading epidemics and epizootics. How plague bacteria persist during inter-epizootic periods is poorly understood, yet is important for predicting when and where epizootics are likely to occur and for designing interventions aimed at local elimination of the pathogen. Existing hypotheses of how Y. pestis is maintained within plague foci typically center on host abundance or diversity, but little attention has been paid to the importance of flea diversity in enzootic maintenance. Our study compares host and flea abundance and diversity along an elevation gradient that spans from low elevation sites outside of a plague focus in the West Nile region of Uganda (∼725–1160 m) to higher elevation sites within the focus (∼1380–1630 m). Based on a year of sampling, we showed that host abundance and diversity, as well as total flea abundance on hosts was similar between sites inside compared with outside the plague focus. By contrast, flea diversity was significantly higher inside the focus than outside. Our study highlights the importance of considering flea diversity in models of Y. pestis persistence

Right Hepatectomy in Patients over 70 Years of Age: An Analysis of Liver Function and Outcome.

BACKGROUND: As a consequence of the increase in life expectancy, hepatobiliary surgeons have to deal with an emerging aged population. We aimed to analyze the liver function and outcome after right hepatectomy (RH) in patients over 70 years of age. METHODS: From January 2006 to December 2009, we prospectively collected data of 207 consecutive elective hepatectomies. In patients who had RH, cardiac risk was assessed by a dedicated preoperative workup. Liver failure (LF) was defined by the "fifty-fifty" criteria at postoperative day 5 (POD) and morbidity by the Clavien-Dindo classification. Liver function tests (LFTs) and short-term outcome were retrospectively analyzed in patients over (elderly group, EG) and younger (young group, YG) than 70 years of age. RESULTS: Eighty-seven consecutive RH were performed during the study period. Indication for surgery included 90 % malignancy in 47 % of patients requiring preoperative chemotherapy. ASA grade > 2 (44 vs. 16 %, p = 0.027), ischemic heart disease (17 vs. 5 %, p = 0.076), and preoperative cardiac failure (26 vs. 2 %, p < 0.001) were more frequent in the EG (n = 23) than in the YG (n = 64). Both groups were similar regarding rates of normal liver parenchyma, chemotherapy and intraoperative parameters. The overall morbidity rates were comparable, but the serious complication (grades III-V) rate was relatively higher in the EG (39 vs. 25 %, p = 0.199), particularly in patients with diabetes mellitus (100 vs. 29 %, p = 0.04) and those who had additional nonhepatic surgery (67 vs. 35 %, p = 0.110) and transfusions (44 vs. 30 %, p = 0.523). The 90-day mortality rate was similar (9 % in the EG vs. 3 % in the YG, p = 0.28) and was related to heart failure in the EG. LFTs showed a similar trend from POD 1 to 8, and patients ≥70 years of age had no liver failure. CONCLUSIONS: Age ≥70 years alone is not a contraindication to RH. However, major morbidity is particularly higher in the elderly with diabetes. This high-risk group should be closely monitored in the postoperative course. Liver function is not altered in the elderly patient after RH

Small mammal community response to early meadow–forest succession

Abstract Background With farmland afforestation becoming common policy in many European Union countries, we studied how early forest succession (from meadow to young stand) influences small mammal species composition, diversity, abundance and biomass. Despite numerous investigations into forest succession, almost no attention has been given to the small mammal community change in the early-successional forest ecosystems, starting with the pre-forest habitat and ending with stand formation and the establishment of tree dominance. We compared small mammal communities in meadows at the initial stage of regrowth (with saplings less than 10 cm in height), in young forest (5–10 years old) and more advanced forest (15–20 years) in both cases of human-induced forest succession, where the trees had been planted, and natural forest succession, where natural regrowth of meadows had occurred. Results The greatest diversity of small mammal species was recorded in the meadow (H  =  2.95), with a lower diversity found in the young forest (H  =  2.61) and even lower in the advanced forest (H  =  2.04), the last habitat being the most monodominantic. The order of species dominance from Microtus sp. (M. arvalis, M. agrestis), Myodes glareolus, Apodemus flavicollis, Sorex araneus, A. agrarius in the meadow changed to M. glareolus, S. araneus, M. arvalis, M. agrestis in the young forest and to M. glareolus, A. flavicollis, S. araneus in the advanced forest. The lowest relative abundance of small mammals was recorded in the meadow (18.19  ±  2.27 ind. Per 100 trap-days), with Microtus voles being the most abundant. Relative abundance was higher in the young forest (22.72  ±  2.25 ind. Per 100 trap-days), with Myodes glareolus being the most abundant (7.59  ±  0.96 ind. Per 100 trap-days) and at its highest in the advanced forest (23.91  ±  2.77 ind. Per 100 trap-days), again with M. glareolus being the most abundant (15.54  ±  2.35 ind. Per 100 trap-days). Conclusions Thus, our analysis suggests that that during early meadow-forest succession, the diversity of the small mammal community declines – the number of species decreases as typical meadow species are lost due to the transformation of the habitat and one or a few species became dominants. However, the relative abundance of the small mammals increases. Biological indices of small mammal communities differed between natural and human-induced meadow-forest succession

Gamma-Ray Energies for Calibration of Ge(Li) Spectrometers

Gamma-ray energies are compared for bent-crystal measurements, Ge(Li) measurements, and other measurements. 150 gamma-ray energies below 3450 keV from 35 isotopes are being calibrated for calibration of Ge(Li) spectrometers. (WHK