The STARTWAVE atmospheric water database

International audienceThe STARTWAVE (STudies in Atmospheric Radiative Transfer and Water Vapour Effects) project aims to investigate the role which water vapour plays in the climate system, and in particular its interaction with radiation. Within this framework, an ongoing water vapour database project was set up which comprises integrated water vapour (IWV) measurements made over the last ten years by ground-based microwave radiometers, Global Positioning System (GPS) receivers and sun photometers located throughout Switzerland at altitudes between 330 and 3584 m. At Bern (46.95° N, 7.44° E) tropospheric and stratospheric water vapour profiles are obtained on a regular basis and integrated liquid water, which is important for cloud characterisation, is also measured. Additional stratospheric water vapour profiles are obtained by an airborne microwave radiometer which observes large parts of the northern hemisphere during yearly flight campaigns. The database allows us to validate the various water vapour measurement techniques. Comparisons between IWV measured by the Payerne radiosonde with that measured at Bern by two microwave radiometers, GPS and sun photometer showed instrument biases within ±0.5 mm. The bias in GPS relative to sun photometer over the 2001 to 2004 period was ?0.8 mm at Payerne (46.81° N, 6.94° E, 490 m), which lies in the Swiss plains north of the Alps, and +0.6 mm at Davos (46.81° N, 9.84° E, 1598 m), which is located within the Alps in the eastern part of Switzerland. At Locarno (46.18° N, 8.78° E, 366 m), which is located on the south side of the Alps, the bias is +1.9 mm. The sun photometer at Locarno was found to have a bias of ?2.2 mm (13% of the mean annual IWV) relative to the data from the closest radiosonde station at Milano. This result led to a yearly rotation of the sun photometer instruments between low and high altitude stations to improve the calibrations. In order to demonstrate the capabilites of the database for studying water vapour variations, we investigated a front which crossed Switzerland between 18 November 2004 and 19 November 2004. During the frontal passage, the GPS and microwave radiometers at Bern and Payerne showed an increase in IWV of between 7 and 9 mm. The GPS IWV measurements were corrected to a standard height of 500 m, using an empirically derived exponential relationship between IWV and altitude. A qualitative comparison was made between plots of the IWV distribution measured by the GPS and the 6.2 µm water vapour channel on the Meteosat Second Generation (MSG) satellite. Both showed that the moist air moved in from a northerly direction, although the MSG showed an increase in water vapour several hours before increases in IWV were detected by GPS or microwave radiometer. This is probably due to the fact that the satellite instrument is sensitive to an atmospheric layer at around 320 hPa, which makes a contribution of one percent or less to the IWV

A portrait of the immune response to proliferative kidney disease (PKD) in rainbow trout

This work was supported by the European Commission under the Horizon H2020 research and innovation programme (Grant H2020‐634429 ParaFishControl) and by the European Research Council (ERC Consolidator Grant 2016 725061 TEMUBLYM). CB was supported by the SNSF Post‐Doc Mobility grant P400PB_183824.Peer reviewedPublisher PD

Spectroscopy and Biosensing with Optically Resonant Dielectric Nanostructures

Resonant dielectric nanoparticles (RDNs) made of materials with large positive dielectric permittivity, such as Si, GaP, GaAs, have become a powerful platform for modern light science, enabling various fascinating applications in nanophotonics and quantum optics. In addition to light localization at the nanoscale, dielectric nanostructures provide electric and magnetic resonant responses throughout the visible and infrared spectrum, low dissipative losses and optical heating, low doping effect and absence of quenching, which are interesting for spectroscopy and biosensing applications. In this review, we present state-of-the-art applications of optically resonant high-index dielectric nanostructures as a multifunctional platform for light-matter interactions. Nanoscale control of quantum emitters and applications for enhanced spectroscopy including fluorescence spectroscopy, surface-enhanced Raman scattering (SERS), biosensing, and lab-on-a-chip technology are surveyed. We describe the theoretical background underlying these effects, overview realizations of specific resonant dielectric nanostructures and hybrid excitonic systems, and outlook the challenges in this field, which remain open to future research

Electron correlation in two-photon double ionization of helium from attosecond to FEL pulses

We investigate the role of electron correlation in the two-photon double ionization of helium for ultrashort XUV pulses with durations ranging from a hundred attoseconds to a few femtoseconds. We perform time-dependent ab initio calculations for pulses with mean frequencies in the so-called "sequential" regime (photon energy above 54.4 eV). Electron correlation induced by the time correlation between emission events manifests itself in the angular distribution of the ejected electrons, which strongly depends on the energy sharing between them. We show that for ultrashort pulses two-photon double ionization probabilities scale non-uniformly with pulse duration depending on the energy sharing between the electrons. Most interestingly we find evidence for an interference between direct ("nonsequential") and indirect ("sequential") double photo-ionization with intermediate shake-up states, the strength of which is controlled by the pulse duration. This observation may provide a route toward measuring the pulse duration of FEL pulses.Comment: 9 pages, 6 figure

The compositional and evolutionary logic of metabolism

Metabolism displays striking and robust regularities in the forms of modularity and hierarchy, whose composition may be compactly described. This renders metabolic architecture comprehensible as a system, and suggests the order in which layers of that system emerged. Metabolism also serves as the foundation in other hierarchies, at least up to cellular integration including bioenergetics and molecular replication, and trophic ecology. The recapitulation of patterns first seen in metabolism, in these higher levels, suggests metabolism as a source of causation or constraint on many forms of organization in the biosphere. We identify as modules widely reused subsets of chemicals, reactions, or functions, each with a conserved internal structure. At the small molecule substrate level, module boundaries are generally associated with the most complex reaction mechanisms and the most conserved enzymes. Cofactors form a structurally and functionally distinctive control layer over the small-molecule substrate. Complex cofactors are often used at module boundaries of the substrate level, while simpler ones participate in widely used reactions. Cofactor functions thus act as "keys" that incorporate classes of organic reactions within biochemistry. The same modules that organize the compositional diversity of metabolism are argued to have governed long-term evolution. Early evolution of core metabolism, especially carbon-fixation, appears to have required few innovations among a small number of conserved modules, to produce adaptations to simple biogeochemical changes of environment. We demonstrate these features of metabolism at several levels of hierarchy, beginning with the small-molecule substrate and network architecture, continuing with cofactors and key conserved reactions, and culminating in the aggregation of multiple diverse physical and biochemical processes in cells.Comment: 56 pages, 28 figure

Elevated uptake of CO₂ over Europe inferred from GOSAT X_CO₂ retrievals: a real phenomenon or an artefact of the analysis?

Estimates of the natural CO2 flux over Europe inferred from in situ measurements of atmospheric CO2 mole fraction have been used previously to check top-down flux estimates inferred from space-borne dry-air CO2 column (XCO2 ) retrievals. Recent work has shown that CO2 fluxes inferred from XCO2 5 data from the Japanese Greenhouse gases Observing SATellite (GOSAT) have a larger seasonal amplitude and a more negative annual net CO2 balance than those inferred from the in situ data. The causes of this enhanced European CO2 uptake have since become the focus of recent studies. We show this elevated uptake over Europe could largely be explained by mis-fitting 10 data due to regional biases. We establish a reference in situ inversion that uses an Ensemble Kalman Filter (EnKF) to assimilate surface flask data and the XCO2 data from the surface-based Total Carbon Column Observing Network (TCCON). The same EnKF system is also used to assimilate two, independent versions of GOSAT XCO2 data. We find that the GOSAT-inferred European terrestrial biosphere uptake peaks 15 during the summer, similar to the reference inversion, but the net annual flux is 1.18- 0.1GtCa-1 compared to a value of 0.56-0.1GtCa-1 for our control inversion that uses only in situ data. To reconcile these two estimates, we have performed a series of numerical experiments that assimilate observations with biases or assimilate synthetic observations for which part or all of the GOSAT XCO2 data are replaced with model 20 data. We find that 50-80% of the elevated European uptake in 2010 inferred from GOSAT data is due to retrievals outside the immediate European region, while most of the remainder can be explained by a sub-ppm retrieval bias over Europe. We have used data assimilation techniques to estimate monthly GOSAT XCO2 biases from the joint assimilation of in situ observations and GOSAT XCO2 retrievals. We find a monthly 25 varying bias of up to 0.5 ppm can explain an overestimate of the annual sink of up to 0.18 GtCa-1

-WAVVAP) campaign

[1] We present a validation study for the ground-based Middle Atmospheric Water Vapour Radiometer (MIAWARA) operating at 22 GHz. MIAWARA measures the water vapor profile in the range of 20-80 km. The validation was conducted in two phases at different geographical locations. During the first operational period the radiometer was operated at middle latitudes in Bern, Switzerland, and the measured water vapor profiles were compared with the HALOE satellite instrument. The agreement between HALOE and MIAWARA was for most altitudes better than 10%. The agreement between the balloon instruments and MIAWARA was better than 2% for a total number of 10 comparable flights. This showed the potential of MIAWARA in water vapor retrieval down to 20 km. In addition, the northern Finland MIAWARA profiles were compared with POAM III water vapor profiles. This comparison confirmed the good agreement with the other instruments, and the difference between MIAWARA and POAM was generally less than 8%. Finally, the tipping curve calibration was validated with tipping curve measurements of the All-Sky Multi Wavelength Radiometer (ASMUWARA) which was operated 10 months side by side with MIAWARA. The agreement of the tropospheric opacity derived from these tipping curves agree within 1%