59 research outputs found

    Bandwidth-tuned Wigner-Mott Transition at ν=1/5\nu=1/5: an Infinite Matrix Product State Study

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    Electrons can organize themselves into charge-ordered states to minimize the effects of long-ranged Coulomb interactions. In the presence of a lattice, commensurability constraints lead to the emergence of incompressible Wigner-Mott (WM) insulators at various rational electron fillings, ν =p/q\nu~=p/q. The mechanism for quantum fluctuation-mediated melting of the WM insulators with increasing electron kinetic energy remains an outstanding problem. Here we analyze numerically the bandwidth-tuned transition out of the WM insulator at ν=1/5\nu=1/5 on infinite cylinders with varying circumference. For the two-leg ladder, the transition from the WM insulator to the Luttinger liquid proceeds via a distinct intermediate gapless phase -- the Luther-Emery liquid. We place these results in the context of a low-energy bosonization based theory for the transition. We also comment on the bandwidth-tuned transition(s) on the five-leg cylinder, and connections to ongoing experiments in dual-gated bilayer moir\'e transition metal dichalcogenide materials.Comment: Main text: 5 pages, 3 figures. Supplementary material: 7 pages, 6 figure

    Stochastic kinetics of ribosomes: single motor properties and collective behavior

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    Synthesis of protein molecules in a cell are carried out by ribosomes. A ribosome can be regarded as a molecular motor which utilizes the input chemical energy to move on a messenger RNA (mRNA) track that also serves as a template for the polymerization of the corresponding protein. The forward movement, however, is characterized by an alternating sequence of translocation and pause. Using a quantitative model, which captures the mechanochemical cycle of an individual ribosome, we derive an {\it exact} analytical expression for the distribution of its dwell times at the successive positions on the mRNA track. Inverse of the average dwell time satisfies a ``Michaelis-Menten-like'' equation and is consistent with the general formula for the average velocity of a molecular motor with an unbranched mechano-chemical cycle. Extending this formula appropriately, we also derive the exact force-velocity relation for a ribosome. Often many ribosomes simultaneously move on the same mRNA track, while each synthesizes a copy of the same protein. We extend the model of a single ribosome by incorporating steric exclusion of different individuals on the same track. We draw the phase diagram of this model of ribosome traffic in 3-dimensional spaces spanned by experimentally controllable parameters. We suggest new experimental tests of our theoretical predictions.Comment: Final published versio

    THE ANTIDEPRESSANT DRUG DOXEPIN: A PROMISING ANTIOXIDANT

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    ABSTRACTObjective: Oxidative stress contributes to the pathophysiology of exposure to environmental pollutants and to different free radical generatingbiochemical reactions in a human system leading to various types of age-related ailments. An antioxidant is a substance capable of preventingor slowing down oxidation of other molecules. Administration of different natural or synthetic antioxidants can ably lead to prevention andattenuation of such stress-induced biochemical alterations. Best examples of natural antioxidants are plant-derived flavonoids. The presentstudy has been designated to determine antioxidant properties in antidepressant compound doxepin which is structurally similar to flavonoidquercetin.Methods: Antioxidant capacity in doxepin was determined with help of several standard conventional procedures such as phosphomolybdenumassay, Ferric ion and cupric ion reducing power assays, ferrous ion chelating activity assay, hydrogen peroxide, and nitric oxide scavenging activityassays.Results: Doxepin showed a stable rise in its antioxidant activity in a dose-dependent manner as determined by ferric as well as cupric ion reducingcapacity and by phosphomolybdenum assay. An almost identical observation was noted while determining ferrous ion chelating activity. Furthermore,doxepin showed a strong nitric oxide scavenging activity in all the concentrations used in the study while its hydrogen peroxide scavenging activitywas only observed at 500 μg/ml of doxepin.Conclusion: Thus, our study opens up a new vista in search for antioxidants not only from plant sources but also from clinically establishedpharmaceutical compounds that are already in practical use among patients.Keywords: Antioxidant, Antidepressant, Doxepin, Quercetin, Flavanol, Flavonoids

    A DNA nanomachine that maps spatial and temporal pH changes inside living cells

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    DNA nanomachines are synthetic assemblies that switch between defined molecular conformations upon stimulation by external triggers. Previously, the performance of DNA devices has been limited to in vitro applications. Here we report the construction of a DNA nanomachine called the I-switch, which is triggered by protons and functions as a pH sensor based on fluorescence resonance energy transfer (FRET) inside living cells. It is an efficient reporter of pH from pH 5.5 to 6.8, with a high dynamic range between pH 5.8 and 7. To demonstrate its ability to function inside living cells we use the I-switch to map spatial and temporal pH changes associated with endosome maturation. The performance of our DNA nanodevices inside living systems illustrates the potential of DNA scaffolds responsive to more complex triggers in sensing, diagnostics and targeted therapies in living systems

    Simultaneous multi-wavelength observations of the TeV Blazar Mrk 421 during February - March 2003: X-ray and NIR correlated variability

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    In the present paper, we have reported the result of simultaneous multi-wavelength observations of the TeV blazar Mrk 421 during February - March 2003. In this period, we have observed Mrk 421 using Pachmarhi Array of \v{C}erenkov Telescopes (PACT) of Tata Institute of Fundamental Research at Pachmarhi, India. Other simultaneous data were taken from the published literature and public data archives. We have analyzed the high quality X-ray (2-20 keV) observations from the NASA Rossi X-Ray Timing Explorer (RXTE). We have seen a possible correlated variability between X-ray and J band (1.25 μ\mu) near infrared (NIR) wavelength. This is the first case of X-ray and NIR correlated variability in Mrk 421 or any high energy peaked (HBL) blazar. The correlated variability reported here is indicating a similar origin for NIR and X-ray emission. The emission is not affected much by the environment of the surrounding medium around the central engine of the Mrk 421. The observations are consistent with the shock-in-jet model for the emission of radiations.Comment: 11 pages, 5 figures, Accepted for Publication in ChJA

    Planned Marketing Adaptation and Multinationals' Choices Between Acquisitions and Greenfields

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    International marketing studies have extensively examined the antecedents of firms' marketing standardization/ adaptation decisions. However, it is unclear whether such decisions, once planned, codetermine the choice between buying and building foreign subsidiaries. Analyzing a sample of 150 foreign entries by Dutch firms, the authors find that the level of marketing adaptation planned for a wholly owned subsidiary is positively related to the likelihood that the subsidiary will be established through an acquisition rather than through a greenfield investment. Moreover, the authors find substantial evidence that this positive relationship is stronger for firms that (1) are establishing relatively larger subsidiaries, (2) have less experience with the industry entered, or (3) are entering less developed countries. The findings show that firms pursuing higher levels of marketing adaptation assign more value to the marketing adaptation advantages of acquisitions over greenfields, especially if the risks associated with implementing the planned adaptation level are high. In addition, firms typically strive for a fit between their international marketing strategy and their mode of foreign establishment. (authors' abstract

    Machine Learning-Driven Multiscale Modeling: Bridging the Scales with a Next-Generation Simulation Infrastructure

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    Interdependence across time and length scales is common in biology, where atomic interactions can impact larger-scale phenomenon. Such dependence is especially true for a well-known cancer signaling pathway, where the membrane-bound RAS protein binds an effector protein called RAF. To capture the driving forces that bring RAS and RAF (represented as two domains, RBD and CRD) together on the plasma membrane, simulations with the ability to calculate atomic detail while having long time and large length- scales are needed. The Multiscale Machine-Learned Modeling Infrastructure (MuMMI) is able to resolve RAS/RAF protein-membrane interactions that identify specific lipid-protein fingerprints that enhance protein orientations viable for effector binding. MuMMI is a fully automated, ensemble-based multiscale approach connecting three resolution scales: (1) the coarsest scale is a continuum model able to simulate milliseconds of time for a 1 μm2 membrane, (2) the middle scale is a coarse-grained (CG) Martini bead model to explore protein-lipid interactions, and (3) the finest scale is an all-atom (AA) model capturing specific interactions between lipids and proteins. MuMMI dynamically couples adjacent scales in a pairwise manner using machine learning (ML). The dynamic coupling allows for better sampling of the refined scale from the adjacent coarse scale (forward) and on-the-fly feedback to improve the fidelity of the coarser scale from the adjacent refined scale (backward). MuMMI operates efficiently at any scale, from a few compute nodes to the largest supercomputers in the world, and is generalizable to simulate different systems. As computing resources continue to increase and multiscale methods continue to advance, fully automated multiscale simulations (like MuMMI) will be commonly used to address complex science questions

    Cell-surface sensors for real-time probing of cellular environments

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    Author Manuscript 2012 August 1.The ability to explore cell signalling and cell-to-cell communication is essential for understanding cell biology and developing effective therapeutics. However, it is not yet possible to monitor the interaction of cells with their environments in real time. Here, we show that a fluorescent sensor attached to a cell membrane can detect signalling molecules in the cellular environment. The sensor is an aptamer (a short length of single-stranded DNA) that binds to platelet-derived growth factor (PDGF) and contains a pair of fluorescent dyes. When bound to PDGF, the aptamer changes conformation and the dyes come closer to each other, producing a signal. The sensor, which is covalently attached to the membranes of mesenchymal stem cells, can quantitatively detect with high spatial and temporal resolution PDGF that is added in cell culture medium or secreted by neighbouring cells. The engineered stem cells retain their ability to find their way to the bone marrow and can be monitored in vivo at the single-cell level using intravital microscopy.National Institutes of Health (U.S.) (Grant HL097172)National Institutes of Health (U.S.) (Grant HL095722)National Institutes of Health (U.S.) (Grant DE019191)National Institutes of Health (U.S.) (Grant NIAID 5RC1AI086152)Charles A. Dana FoundationAmerican Heart Association (Grant 0970178N)National Science Foundation (U.S.) (Graduate Fellowship

    The Impact of Brand Quality on Shareholder Wealth

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    This study examines the impact of brand quality on three components of shareholder wealth: stock returns, systematic risk, and idiosyncratic risk. The study finds that brand quality enhances shareholder wealth insofar as unanticipated changes in brand quality are positively associated with stock returns and negatively related to changes in idiosyncratic risk. However, unanticipated changes in brand quality can also erode shareholder wealth because they have a positive association with changes in systematic risk. The study introduces a contingency theory view to the marketing-finance interface by analyzing the moderating role of two factors that are widely followed by investors. The results show an unanticipated increase (decrease) in current-period earnings enhances (depletes) the positive impact of unanticipated changes in brand quality on stock returns and mitigates (enhances) their deleterious effects on changes in systematic risk. Similarly, brand quality is more valuable for firms facing increasing competition (i.e., unanticipated decreases in industry concentration). The results are robust to endogeneity concerns and across alternative models. The authors conclude by discussing the nuanced implications of their findings for shareholder wealth, reporting brand quality to investors, and its use in employee evaluation
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