Towards the first linkage map of the Didymella rabiei genome.

A genetic map was developed for the ascomycete Didymella rabiei (Kovachevski) v. Arx (anamorph: Ascochyta rabiei Pass. Labr.), the causal agent of Ascochyta blight in chickpea (Cicer arietinum L.). The map was generated with 77 F1 progeny derived from crossing an isolate from the U.S.A. and an isolate from Syria. A total of 232 DAF (DNA AmplificationFingerprinting) primers and 37 STMS (Sequence-Tagged Microsatellite Site) primer pairs were tested for polymorphism between the parental isolates; 50 markers were mapped, 36 DAFs and 14 STMSs. These markers cover 261.4cM in ten linkage groups. Nineteen markers remained unlinked. Significant deviation from the expected 1:1 segregation ratios was observed for only two markers (Prob. of x2 <0.05). The implications of our results on ploidy level of the asexual spores are discussed

Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level

<p>Abstract</p> <p>Background</p> <p><it>Rhizopus oryzae </it>is a zygomycete filamentous fungus, well-known as a saprobe ubiquitous in soil and as a pathogenic/spoilage fungus, causing Rhizopus rot and mucomycoses.</p> <p>Results</p> <p>Carbohydrate Active enzyme (CAZy) annotation of the <it>R. oryzae </it>identified, in contrast to other filamentous fungi, a low number of glycoside hydrolases (GHs) and a high number of glycosyl transferases (GTs) and carbohydrate esterases (CEs). A detailed analysis of CAZy families, supported by growth data, demonstrates highly specialized plant and fungal cell wall degrading abilities distinct from ascomycetes and basidiomycetes. The specific genomic and growth features for degradation of easily digestible plant cell wall mono- and polysaccharides (starch, galactomannan, unbranched pectin, hexose sugars), chitin, chitosan, β-1,3-glucan and fungal cell wall fractions suggest specific adaptations of <it>R. oryzae </it>to its environment.</p> <p>Conclusions</p> <p>CAZy analyses of the genome of the zygomycete fungus <it>R. oryzae </it>and comparison to ascomycetes and basidiomycete species revealed how evolution has shaped its genetic content with respect to carbohydrate degradation, after divergence from the Ascomycota and Basidiomycota.</p

Eastern Mediterranean sea levels through the last interglacial from a coastal-marine sequence in northern Israel

A last interglacial (Marine Isotope Stage, MIS5e) marine-coastal sequence has been identified along the Galilee coast of Israel, with the type section located at Rosh Hanikra (RH). The microtidal regime and tectonic stability, along with the detailed stratigraphy of the RH shore, make the study region ideally suited for determining relative sea level (RSL) through the MIS5e interval in the eastern Mediterranean. The sequence contains fossilized microtidal subunits at a few meters above the current sea level. Unfortunately, all fossils were found to be altered, so that U-Th datings cannot be considered to represent initial deposition. We contend that U-Th dating of Strombus bubonius shells (recrystallized to calcite) suffices to indicate a lower limit of ?110 ± 8 ka for the time sea level dropped below the RH sedimentary sequence. The RH-section comprises three main subunits of a previously determined member (the Yasaf Member): (a) a gravelly unit containing the diagnostic gastropod Strombus bubonius Lamarck (Persististrombus latus), which was deposited in the intertidal to super-tidal stormy zone; (b) Vermetidae reef domes indicating a shallow-water depositional environment; and (c) coarse to medium-sized, bioclastic sandstone, probably deposited in the shallow sub-tidal zone. The sequence overlies three abrasion platforms that are cut by tidal channels at elevations of +0.8 m, +2.6 m and +3.4 m, and which are filled with MIS5e sediments. We present a detailed study of the sequence, with emphasis on stratigraphic, sedimentological, and palaeontological characteristics that indicate sea-level changes. Although without precise absolute dating, the stratigraphic sequence of RH through MIS5e allows us to identify a time-series of RSL positions, using the elevations of three stratigraphic subunits. Reconstructed RSL values range from +1.0 m to +7 m (with uncertainly < 1 m), and most fall within a narrow range of +1.0 to +3.3 m. Toward the end of MIS5e, RSL exceeded about +7 m. Glacial isostatic adjustment (GIA) modelling using multiple ice histories suggests that GIA corrections range between about ?1.8 m and +5.4 m. This implies that global mean sea level resided between ?0.8 m and +8.7 m during most of MIS5e. The absolute GIA correction would not be constant through the interglacial, and reduces to a range of ?1.2 m to+ 2.4 m towards the end of the interglacial

Use of biocontrol agents and botanicals in integrated management of Botrytis cinerea in table grape vineyards

BACKGROUND: There is increasing interest in the use of biological control agents (BCAs) and botanicals (BOTs) due to increasing awareness of the environmental and human health risks associated with synthetic plant protection products. The BCAs Bacillus subtilis strain QST713, Bacillus amyloliquefaciens strain D747 and Aureobasidium pullulans strains DSM14940 and DSM14941, and the BOTs Melaleuca alternifolia and terpenic extracts are proposed for the control of grey mould in vineyards. This study was aimed at evaluating their effectiveness in integrated crop management strategies and their outcomes in terms of the management of fungicide resistance and residues. RESULTS: In field trials carried out on table grapes in southern Italy, use of BCAs or BOTs alternately or mixtures of BCAs or BOTs with the succinate dehydrogenase inhibitor fungicide fluopyram showed efficacy of up to 96% against grey mould on bunches, comparable with the chemical reference strategy (up to 87%). By contrast, use of BCAs or BOTs (up to 11 sprays) alone was not effective (&lt; 30%) under high disease pressure. The integrated use of BCAs or BOTs reduced the spread of succinate dehydrogenase inhibitor-resistant conidia, as well as fungicide residues in grapes. CONCLUSIONS: Spray schedules based on integration of BCAs or BOTs with fungicides are effective against grey mould and reduce the risk of fungicide resistance in B. cinerea and fungicide residues in grapes