59 research outputs found
Investigation on wear and corrosion behavior of equal channel angular pressed aluminium 2014 alloy
Aluminium 2014 alloy solutionized at 495°C, aged at 195°C was subjected to Equal Channel Angular Pressing (ECAP). Dry sliding wear tests were conducted using pin on disc tribometer system under nominal loads of 10N and 30N with constant speed 2m/s for 2000m in order to investigate their wear behavior after ECAP. The Co-efficient of friction and loss in volume were decreased after ECAP. The dominant wear mechanism observed was adhesion, delamination in addition to these wear mechanisms, oxidation and transfer of Fe from the counter surface to the Al 2014 pin were observed at higher loading condition. The corrosion behavior was evaluated by potentiodynamic polarization (PDP) and electrochemical impedance spectroscopy (EIS) in 3.5% NaCl solution. The results obtained from PDP showed higher corrosion potential and lower corrosion density after ECAP than base. Electrochemical impedance spectroscopy (EIS) showed higher charge transfer resistance after ECAP. Surface morphology showed decreased pit size and increased oxygen content in ECAP sample than base after PDP
From cheek swabs to consensus sequences : an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes
Background: Next-generation DNA sequencing (NGS) technologies have made huge impacts in many fields of biological research, but especially in evolutionary biology. One area where NGS has shown potential is for high-throughput sequencing of complete mtDNA genomes (of humans and other animals). Despite the increasing use of NGS technologies and a better appreciation of their importance in answering biological questions, there remain significant obstacles to the successful implementation of NGS-based projects, especially for new users.
Results: Here we present an ‘A to Z’ protocol for obtaining complete human mitochondrial (mtDNA) genomes – from DNA extraction to consensus sequence. Although designed for use on humans, this protocol could also be used to sequence small, organellar genomes from other species, and also nuclear loci. This protocol includes DNA extraction, PCR amplification, fragmentation of PCR products, barcoding of fragments, sequencing using the 454 GS FLX platform, and a complete bioinformatics pipeline (primer removal, reference-based mapping, output of coverage plots and SNP calling).
Conclusions: All steps in this protocol are designed to be straightforward to implement, especially for researchers who are undertaking next-generation sequencing for the first time. The molecular steps are scalable to large numbers (hundreds) of individuals and all steps post-DNA extraction can be carried out in 96-well plate format. Also, the protocol has been assembled so that individual ‘modules’ can be swapped out to suit available resources
Neolithic Mitochondrial Haplogroup H Genomes and the Genetic Origins of Europeans
Haplogroup H dominates present-day Western European mitochondrial DNA variability (\u3e40%), yet was less common (~19%) among Early Neolithic farmers (~5450 BC) and virtually absent in Mesolithic hunter-gatherers. Here we investigate this major component of the maternal population history of modern Europeans and sequence 39 complete haplogroup H mitochondrial genomes from ancient human remains. We then compare this ‘real-time’ genetic data with cultural changes taking place between the Early Neolithic (~5450 BC) and Bronze Age (~2200 BC) in Central Europe. Our results reveal that the current diversity and distribution of haplogroup H were largely established by the Mid Neolithic (~4000 BC), but with substantial genetic contributions from subsequent pan-European cultures such as the Bell Beakers expanding out of Iberia in the Late Neolithic (~2800 BC). Dated haplogroup H genomes allow us to reconstruct the recent evolutionary history of haplogroup H and reveal a mutation rate 45% higher than current estimates for human mitochondria
MAVIS: The adaptive optics module feasibility study
The Adaptive Optics Module of MAVIS is a self-contained MCAO module, which delivers a corrected FoV to the postfocal scientific instruments, in the visible. The module aims to exploit the full potential of the ESO VLT UT4 Adaptive Optics Facility, which is composed of the high spatial frequency deformable secondary mirror and the laser guide stars launching and control systems. During the MAVIS Phase A, we evaluated, with the support of simulations and analysis at different levels, the main terms of the error budgets aiming at estimating the realistic AOM performance. After introducing the current opto-mechanical design and AO scheme of the AOM, we here present the standard wavefront error budget and the other budgets, including manufacturing, alignment of the module, thermal behavior and noncommon path aberrations, together with the contribution of the upstream telescope system
Population differentiation of Southern Indian male lineages correlates with agricultural expansions predating the caste system
Christina J. Adler, Alan Cooper, Clio S.I. Der Sarkissian and Wolfgang Haak are contributors to the Genographic ConsortiumPrevious studies that pooled Indian populations from a wide variety of geographical locations, have obtained contradictory conclusions about the processes of the establishment of the Varna caste system and its genetic impact on the origins and demographic histories of Indian populations. To further investigate these questions we took advantage that both Y chromosome and caste designation are paternally inherited, and genotyped 1,680 Y chromosomes representing 12 tribal and 19 non-tribal (caste) endogamous populations from the predominantly Dravidian-speaking Tamil Nadu state in the southernmost part of India. Tribes and castes were both characterized by an overwhelming proportion of putatively Indian autochthonous Y-chromosomal haplogroups (H-M69, F-M89, R1a1-M17, L1-M27, R2-M124, and C5-M356; 81% combined) with a shared genetic heritage dating back to the late Pleistocene (10–30 Kya), suggesting that more recent Holocene migrations from western Eurasia contributed, <20% of the male lineages. We found strong evidence for genetic structure, associated primarily with the current mode of subsistence. Coalescence analysis suggested that the social stratification was established 4–6 Kya and there was little admixture during the last 3 Kya, implying a minimal genetic impact of the Varna(caste) system from the historically-documented Brahmin migrations into the area. In contrast, the overall Y-chromosomal patterns, the time depth of population diversifications and the period of differentiation were best explained by the emergence of agricultural technology in South Asia. These results highlight the utility of detailed local genetic studies within India, without prior assumptions about the importance of Varna rank status for population grouping, to obtain new insights into the relative influences of past demographic events for the population structure of the whole of modern India.GaneshPrasad ArunKumar, David F. Soria-Hernanz, Valampuri John Kavitha, Varatharajan Santhakumari Arun, Adhikarla Syama, Kumaran Samy Ashokan, Kavandanpatti Thangaraj Gandhirajan, Koothapuli Vijayakumar, Muthuswamy Narayanan, Mariakuttikan Jayalakshmi, Janet S. Ziegle, Ajay K. Royyuru, Laxmi Parida, R. Spencer Wells, Colin Renfrew, Theodore G. Schurr, Chris Tyler Smith, Daniel E. Platt, Ramasamy Pitchappan, The Genographic Consortiu
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