87 research outputs found
5-Fluoromethylornithine, an irreversible and specific inhibitor of l-ornithine:2-oxo-acid aminotransferase
Dielectric relaxation of DNA aqueous solutions
We report on a detailed characterization of complex dielectric response of
Na-DNA aqueous solutions by means of low-frequency dielectric spectroscopy (40
Hz - 110 MHz). Results reveal two broad relaxation modes of strength
20<\Delta\epsilon_LF<100 and 5<\Delta\epsilon_HF<20, centered at 0.5
kHz<\nu_LF<70 kHz and 0.1 MHz<\nu_HF<15 MHz. The characteristic length scale of
the LF process, 50<L_LF<750nm, scales with DNA concentration as
c_DNA^{-0.29\pm0.04} and is independent of the ionic strength in the low added
salt regime. Conversely, the measured length scale of the LF process does not
vary with DNA concentration but depends on the ionic strength of the added salt
as I_s^{-1} in the high added salt regime. On the other hand, the
characteristic length scale of the HF process, 3<L_HF<50 nm, varyes with DNA
concentration as c_DNA^{-0.5} for intermediate and large DNA concentrations. At
low DNA concentrations and in the low added salt limit the characteristic
length scale of the HF process scales as c_DNA^{-0.33}. We put these results in
perspective regarding the integrity of the double stranded form of DNA at low
salt conditions as well as regarding the role of different types of counterions
in different regimes of dielectric dispersion. We argue that the free DNA
counterions are primarily active in the HF relaxation, while the condensed
counterions play a role only in the LF relaxation. We also suggest theoretical
interpretations for all these length scales in the whole regime of DNA and salt
concentrations and discuss their ramifications and limitations.Comment: 15 pages, 9 figure
The Force-Velocity Relation for Growing Biopolymers
The process of force generation by the growth of biopolymers is simulated via
a Langevin-dynamics approach. The interaction forces are taken to have simple
forms that favor the growth of straight fibers from solution. The
force-velocity relation is obtained from the simulations for two versions of
the monomer-monomer force field. It is found that the growth rate drops off
more rapidly with applied force than expected from the simplest theories based
on thermal motion of the obstacle. The discrepancies amount to a factor of
three or more when the applied force exceeds 2.5kT/a, where a is the step size
for the polymer growth. These results are explained on the basis of restricted
diffusion of monomers near the fiber tip. It is also found that the mobility of
the obstacle has little effect on the growth rate, over a broad range.Comment: Latex source, 9 postscript figures, uses psfig.st
Urological complication following aortoiliac graft: case report and review of the literature
Hysteresis in Pressure-Driven DNA Denaturation
In the past, a great deal of attention has been drawn to thermal driven denaturation processes. In recent years, however, the discovery of stress-induced denaturation, observed at the one-molecule level, has revealed new insights into the complex phenomena involved in the thermo-mechanics of DNA function. Understanding the effect of local pressure variations in DNA stability is thus an appealing topic. Such processes as cellular stress, dehydration, and changes in the ionic strength of the medium could explain local pressure changes that will affect the molecular mechanics of DNA and hence its stability. In this work, a theory that accounts for hysteresis in pressure-driven DNA denaturation is proposed. We here combine an irreversible thermodynamic approach with an equation of state based on the Poisson-Boltzmann cell model. The latter one provides a good description of the osmotic pressure over a wide range of DNA concentrations. The resulting theoretical framework predicts, in general, the process of denaturation and, in particular, hysteresis curves for a DNA sequence in terms of system parameters such as salt concentration, density of DNA molecules and temperature in addition to structural and configurational states of DNA. Furthermore, this formalism can be naturally extended to more complex situations, for example, in cases where the host medium is made up of asymmetric salts or in the description of the (helical-like) charge distribution along the DNA molecule. Moreover, since this study incorporates the effect of pressure through a thermodynamic analysis, much of what is known from temperature-driven experiments will shed light on the pressure-induced melting issue
Superstructure and CD spectrum as probes of chromatin integrity.
Two types of chromatin were extracted from the same stock of rat liver nuclei by a short exposure to micrococcal nuclease and by shearing respectively. These two materials which are identical in their protein/DNA content and by the presence of the five histones, were compared by means of circular dichroism and electron microscopy. Under the electron microscope and in absence of any divalent cation a superstructure of the unfixed chromatin fiber can be viewed only with native material but is no more present in sheared one. The increase of CD signal at 280 nm (from 2000 to about 4000 cm2 deg.dmole-1) in the case of sheared chromatin is not related to the loss of superstructure but to the structural changes of DNA inside the nucleosomal core which are always produced by shearing. These two correlated observations offer new sensitive probes of the integrity of any native or reconstituted chromatin
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