The Two-State Prehensile Tail of the Antibacterial Toxin Colicin N

Intrinsically disordered regions within proteins are critical elements in many biomolecular interactions and signaling pathways. Antibacterial toxins of the colicin family, which could provide new antibiotic functions against resistant bacteria, contain disordered N-terminal translocation domains (T-domains) that are essential for receptor binding and the penetration of the Escherichia coli outer membrane. Here we investigate the conformational behavior of the T-domain of colicin N (ColN-T) to understand why such domains are widespread in toxins that target Gram-negative bacteria. Like some other intrinsically disordered proteins in the solution state of the protein, ColN-T shows dual recognition, initially interacting with other domains of the same colicin N molecule and later, during cell killing, binding to two different receptors, OmpF and TolA, in the target bacterium. ColN-T is invisible in the high-resolution x-ray model and yet accounts for 90 of the toxin’s 387 amino acid residues. To reveal its solution structure that underlies such a dynamic and complex system, we carried out mutagenic, biochemical, hydrodynamic and structural studies using analytical ultracentrifugation, NMR, and small-angle x-ray scattering on full-length ColN and its fragments. The structure was accurately modeled from small-angle x-ray scattering data by treating ColN as a flexible system, namely by the ensemble optimization method, which enables a distribution of conformations to be included in the final model. The results reveal, to our knowledge, for the first time the dynamic structure of a colicin T-domain. ColN-T is in dynamic equilibrium between a compact form, showing specific self-recognition and resistance to proteolysis, and an extended form, which most likely allows for effective receptor binding

Emission of 2-methyl-3-buten-2-ol by pines: A potentially large natural source of reactive carbon to the atmosphere

High rates of emission of 2-methyl-3-buten-2-ol (MBO) were measured from needles of several pine species. Emissions of MBO in the light were 1 to 2 orders of magnitude higher than emissions of monoterpenes and, in contrast to monoterpene emissions from pines, were absent in the dark. MBO emissions were strongly dependent on incident light, behaving similarly to net photosynthesis. Emission rates of MBO increased exponentially with temperature up to approximately 35°C. Above approximately 42°G, emission rates declined rapidly. Emissions could be modeled using existing algorithms for isoprene emission. We propose that emissions of MBO from lodgepole and ponderosa pine are the primary source of high concentrations of this compound, averaging 1-3 ppbv, found in ambient air samples collected in Colorado at an isolated mountain site approximately 3050 m above sea level. Subsequent field studies in a ponderosa pine plantation in California confirmed high MBO emissions, which averaged 25 μg C g-1 h-1 for 1-year-old needles, corrected to 30°C and photon flux of 1000 μmol m-2 s-1. A total of 34 pine species growing at Eddy Arboretum in Placerville, California, were investigated, of which 11 exhibited high emissions of MBO (>5 μg C g-1 h-1), and 6 emitted small but detectable amounts. All the emitting species are of North American origin, and most are restricted to western North America. These results indicate that MBO emissions from pines may constitute a significant source of reactive carbon and a significant source of acetone, to the atmosphere, particularly in the western United States. Copyright 1998 by the American Geophysical Union

Emission of 2-methyl-3-buten-2-ol by pines: A potentially large natural source of reactive carbon to the atmosphere

High rates of emission of 2-methyl-3-buten-2-ol (MBO) were measured from needles of several pine species. Emissions of MBO in the light were 1 to 2 orders of magnitude higher than emissions of monoterpenes and, in contrast to monoterpene emissions from pines, were absent in the dark. MBO emissions were strongly dependent on incident light, behaving similarly to net photosynthesis. Emission rates of MBO increased exponentially with temperature up to approximately 35°C. Above approximately 42°G, emission rates declined rapidly. Emissions could be modeled using existing algorithms for isoprene emission. We propose that emissions of MBO from lodgepole and ponderosa pine are the primary source of high concentrations of this compound, averaging 1-3 ppbv, found in ambient air samples collected in Colorado at an isolated mountain site approximately 3050 m above sea level. Subsequent field studies in a ponderosa pine plantation in California confirmed high MBO emissions, which averaged 25 μg C g-1 h-1 for 1-year-old needles, corrected to 30°C and photon flux of 1000 μmol m-2 s-1. A total of 34 pine species growing at Eddy Arboretum in Placerville, California, were investigated, of which 11 exhibited high emissions of MBO (>5 μg C g-1 h-1), and 6 emitted small but detectable amounts. All the emitting species are of North American origin, and most are restricted to western North America. These results indicate that MBO emissions from pines may constitute a significant source of reactive carbon and a significant source of acetone, to the atmosphere, particularly in the western United States. Copyright 1998 by the American Geophysical Union