Strategies for Optimize Off-Lattice Aggregate Simulations

We review some computer algorithms for the simulation of off-lattice clusters grown from a seed, with emphasis on the diffusion-limited aggregation, ballistic aggregation and Eden models. Only those methods which can be immediately extended to distinct off-lattice aggregation processes are discussed. The computer efficiencies of the distinct algorithms are compared.Comment: 6 pages, 7 figures and 3 tables; published at Brazilian Journal of Physics 38, march, 2008 (http://www.sbfisica.org.br/bjp/files/v38_81.pdf

Crystallization, data collection and data processing of maltose-binding protein (MalE) from the phytopathogen Xanthomonas axonopodis pv. citri

Maltose-binding protein is the periplasmic component of the ABC transporter responsible for the uptake of maltose/maltodextrins. The Xanthomonas axonopodis pv. citri maltose-binding protein MalE has been crystallized at 293 Kusing the hanging-drop vapour-diffusion method. The crystal belonged to the primitive hexagonal space group P6_122, with unit-cell parameters a = 123.59, b = 123.59, c = 304.20 Å, and contained two molecules in the asymetric unit. It diffracted to 2.24 Å resolution

Aggregation in a mixture of Brownian and ballistic wandering particles

In this paper, we analyze the scaling properties of a model that has as limiting cases the diffusion-limited aggregation (DLA) and the ballistic aggregation (BA) models. This model allows us to control the radial and angular scaling of the patterns, as well as, their gap distributions. The particles added to the cluster can follow either ballistic trajectories, with probability $P_{ba}$, or random ones, with probability $P_{rw}=1-P_{ba}$. The patterns were characterized through several quantities, including those related to the radial and angular scaling. The fractal dimension as a function of $P_{ba}$ continuously increases from $d_f\approx 1.72$ (DLA dimensionality) for $P_{ba}=0$ to $d_f\approx 2$ (BA dimensionality) for $P_{ba}=1$. However, the lacunarity and the active zone width exhibt a distinct behavior: they are convex functions of $P_{ba}$ with a maximum at $P_{ba}\approx1/2$. Through the analysis of the angular correlation function, we found that the difference between the radial and angular exponents decreases continuously with increasing $P_{ba}$ and rapidly vanishes for $P_{ba}>1/2$, in agreement with recent results concerning the asymptotic scaling of DLA clusters.Comment: 7 pages, 6 figures. accepted for publication on PR

A model for Hopfions on the space-time S^3 x R

We construct static and time dependent exact soliton solutions for a theory of scalar fields taking values on a wide class of two dimensional target spaces, and defined on the four dimensional space-time S^3 x R. The construction is based on an ansatz built out of special coordinates on S^3. The requirement for finite energy introduces boundary conditions that determine an infinite discrete spectrum of frequencies for the oscillating solutions. For the case where the target space is the sphere S^2, we obtain static soliton solutions with non-trivial Hopf topological charges. In addition, such hopfions can oscillate in time, preserving their topological Hopf charge, with any of the frequencies belonging to that infinite discrete spectrum.Comment: Enlarged version with the time-dependent solutions explicitly given. One reference and two eps figures added. 14 pages, late

Costs and Returns Analysis for South Carolina Shrimp Trawlers

This document provides an explanation on how shrimp trawler owners/operators can analyze the effects of changing costs and ex-vessel prices on the profitability of operating a shrimp trawler. An Excel spreadsheet is provided with sample boat costs and revenues. The spreadsheet allows the trawler owner/operator to enter costs and revenues data for their own vessel. This can be used to estimate average costs of landing a pound of shrimp by the vessel owner/operator and the profit (loss) per pound of landed shrimp. As input costs vary for key items like fuel, ice, BRDS, etc, the trawler owner can estimate the impact of these input costs on the total average cost of landing a pound of shrimp. Similarly, as the ex-vessel (landed) price for a pound of shrimp changes, the vessel owner/operator can estimate the impact of these price changes on the profitability of operating the trawler.Resource /Energy Economics and Policy,