Molecular cloning and characterization of the Bacillus subtilis spore photoproduct lyase (spl) gene, which is involved in repair of UV radiation-induced DNA damage during spore germination.

Upon UV irradiation, Bacillus subtilis spore DNA accumulates the novel thymine dimer 5-thyminyl-5,6-dihydrothymine. Spores can repair this "spore photoproduct" (SP) upon germination either by the uvr-mediated general excision repair pathway or by the SP-specific spl pathway, which involves in situ monomerization of SP to two thymines by an enzyme named SP lyase. Mutants lacking both repair pathways produce spores that are extremely sensitive to UV. For cloning DNA that can repair a mutation in the spl pathway called spl-1, a library of EcoRI fragments of chromosomal DNA from B. subtilis 168 was constructed in integrative plasmid pJH101 and introduced by transformation into a mutant B. subtilis strain that carries both the uvrA42 and spl-1 mutations, and transformants whose spores exhibited UV resistance were selected by UV irradiation. With a combination of genetic and physical mapping techniques, the DNA responsible for the restoration of UV resistance was shown to be present on a 2.3-kb EcoRI-HindIII fragment that was mapped to a new locus in the metC-pyrD region of the B. subtilis chromosome immediately downstream from the pstI gene. The spl coding sequence was localized on the cloned fragment by analysis of in vitro-generated deletions and by nucleotide sequencing. The spl nucleotide sequence contains an open reading frame capable of encoding a 40-kDa polypeptide that shows regional amino acid sequence homology to DNA photolyases from a number of bacteria and fungi

Biomass preservation in impact melt ejecta

Meteorites can have played a role in the delivery of the building blocks of life to Earth only if organic compounds are able to survive the high pressures and temperatures of an impact event. Although experimental impact studies have reported the survival of organic compounds, there are uncertainties in scaling experimental conditions to those of a meteorite impact on Earth and organic matter has not been found in highly shocked impact materials in a natural setting. Impact glass linked to the 1.2-km-diameter Darwin crater in western Tasmania is strewn over an area exceeding 400 km2 and is thought to have been ejected by a meteorite impact about 800 kyr ago into terrain consisting of rainforest and swamp. Here we use pyrolysis–gas chromatography–mass spectrometry to show that biomarkers representative of plant species in the local ecosystem—including cellulose, lignin, aliphatic biopolymer and protein remnants—survived the Darwin impact. We find that inside the impact glass the organic components are trapped in porous carbon spheres. We propose that the organic material was captured within impact melt and preserved when the melt quenched to glass, preventing organic decomposition since the impact. We suggest that organic material can survive capture and transport in products of extreme impact processing, at least for a Darwin-sized impact event