Harmonization of design-based mapping for spatial populations

The mapping of a survey variable throughout a continuum or for finite populations of units is usually performed from a model-dependent perspective. Nevertheless, when a sample of locations/units is selected by a probabilistic sampling scheme, the complex task of modelling can be avoided by using the inverse distance weighting interpolator and deriving the properties of maps in a design-based perspective. Conditions ensuring consistency of maps can be derived mainly based on some obvious assumptions about the pattern of the survey variable throughout the study region as well from the feature of the sampling scheme adopted to select locations/units. Nevertheless, in a design-based setting the totals of the survey variable for a set of domains partitioning the study region are commonly estimated by traditional estimators such as the Horvitz–Thompson estimator in the case of finite populations or the Monte-Carlo estimator in the case of continuous populations or by related estimators exploiting the information of auxiliary variables. That necessarily gives rise to different total estimates with respect to those achieved from the resulting maps as the sum of the interpolated values within domains. To obtain non-discrepant results, a harmonization of maps is here suggested, in such a way that the resulting totals arising from maps coincide with those achieved by traditional estimation. The capacity of the harmonization procedure to maintain consistency is argued theoretically and checked by a simulation study performed on some real population

Harmonization of design-based mapping for spatial populations

The mapping of a survey variable throughout a continuum or for finite populations of units is usually performed from a model-dependent perspective. Nevertheless, when a sample of locations/units is selected by a probabilistic sampling scheme, the complex task of modelling can be avoided by using the inverse distance weighting interpolator and deriving the properties of maps in a design-based perspective. Conditions ensuring consistency of maps can be derived mainly based on some obvious assumptions about the pattern of the survey variable throughout the study region as well from the feature of the sampling scheme adopted to select locations/units. Nevertheless, in a design-based setting the totals of the survey variable for a set of domains partitioning the study region are commonly estimated by traditional estimators such as the Horvitz–Thompson estimator in the case of finite populations or the Monte-Carlo estimator in the case of continuous populations or by related estimators exploiting the information of auxiliary variables. That necessarily gives rise to different total estimates with respect to those achieved from the resulting maps as the sum of the interpolated values within domains. To obtain non-discrepant results, a harmonization of maps is here suggested, in such a way that the resulting totals arising from maps coincide with those achieved by traditional estimation. The capacity of the harmonization procedure to maintain consistency is argued theoretically and checked by a simulation study performed on some real populations

Insects and the city: what island biogeography tells us about insect conservation in urban areas

Habitat fragmentation caused by urbanization is considered a prominent threat to biodiversity. Urban development creates a mosaic of natural fragments which can be occupied by organisms able to survive in small spaces. These fragments are a set of habitat islands separated by less suitable non-native habitats. Because of their isolation, communities of urban green spaces can be investigated using hypotheses developed in island biogeography. The "equilibrium theory of island biogeography" (ETIB) allows the formulation of some predictions about how various characteristics of green spaces (such as their area, shape, level of isolation, environmental heterogeneity, age) should influence species richness. Many studies found support for ETIB predictions, but results varied considerably according to the species' sensitivity to patch size, matrix characteristics, and history of the city. In some cases ETIB predictions were falsified. These contrasting results warn against making generalizations on conservation strategies only based on ETIB models. On the other hand, the ETIB may represent a useful framework for urban conservation, especially for small animals like insects, if the roles of other factors, such as the surrounding landscape, the specific needs of the species under study, and the history of the urbanization process, are taken into account

SPATIAL VARIATIONS IN RARITY IN THE AEGEAN TENEBRIONID BEETLES (Coleoptera, Tenebrionidae)

Three measures of species rarity were calculated to investigate possible spatial patterns of variation in tenebrionid community rarity on the Aegean islands. For each species rarity was evaluated as geographic distribution (mean incidence of species on islands in the archipelago), ecological tolerance (total area of the islands occupied) and population density (number of decades of species’ records from 1870 to 2000). In addition, Kattan’s index of vulnerability was computed. These rarity and vulnerability measures were used to construct analogous indexes at community level. Plotting species richness on island coordinates, produced a map where richness decreased in the centre of the archipelago, reaching highest values on peripheral islands. Geographic rarity increased from the centre of the archipelago to periphery. By contrast, ecological tolerance and population density show the following pattern: islands located very close to the Anatolian mainland, as well as those that are clumped, host the most eurytopic and abundant species, while remote southern islands have ecologically specialized faunas with low population density. Vulnerability (i.e. the reverse of Kattan’s index applied to communities) decreased in remote islands, which are usually also the smallest. As a whole the tenebrionid beetles on the Aegean Islands constitute threatened faunal assemblages of great ‘rarity’ under several dimensions, and some islands are especially rich in rare species, deserving special attention in conservation efforts

A parabolic approach to the control of opinion spreading

We analyze the problem of controlling to consensus a nonlinear system modeling opinion spreading. We derive explicit exponential estimates on the cost of approximately controlling these systems to consensus, as a function of the number of agents N and the control time-horizon T. Our strategy makes use of known results on the controllability of spatially discretized semilinear parabolic equations. Both systems can be linked through time-rescalin

Jasmonate promotes auxin-induced adventitious rooting in dark-grown Arabidopsis thaliana seedlings and stem thin cell layers by a cross-talk with ethylene signalling and a modulation of xylogenesis

Background: Adventitious roots (ARs) are often necessary for plant survival, and essential for successful micropropagation. In Arabidopsis thaliana dark-grown seedlings AR-formation occurs from the hypocotyl and is enhanced by application of indole-3-butyric acid (IBA) combined with kinetin (Kin). The same IBA + Kin-treatment induces AR-formation in thin cell layers (TCLs). Auxin is the main inducer of AR-formation and xylogenesis in numerous species and experimental systems. Xylogenesis is competitive to AR-formation in Arabidopsis hypocotyls and TCLs. Jasmonates (JAs) negatively affect AR-formation in de-etiolated Arabidopsis seedlings, but positively affect both AR-formation and xylogenesis in tobacco dark-grown IBA + Kin TCLs. In Arabidopsis the interplay between JAs and auxin in AR-formation vs xylogenesis needs investigation. In de-etiolated Arabidopsis seedlings, the Auxin Response Factors ARF6 and ARF8 positively regulate AR-formation and ARF17 negatively affects the process, but their role in xylogenesis is unknown. The cross-talk between auxin and ethylene (ET) is also important for AR-formation and xylogenesis, occurring through EIN3/EIL1 signalling pathway. EIN3/EIL1 is the direct link for JA and ET-signalling. The research investigated JA role on AR-formation and xylogenesis in Arabidopsis dark-grown seedlings and TCLs, and the relationship with ET and auxin. The JA-donor methyl-jasmonate (MeJA), and/or the ET precursor 1-aminocyclopropane-1-carboxylic acid were applied, and the response of mutants in JA-synthesis and -signalling, and ET-signalling investigated. Endogenous levels of auxin, JA and JA-related compounds, and ARF6, ARF8 and ARF17 expression were monitored. Results: MeJA, at 0.01 μM, enhances AR-formation, when combined with IBA + Kin, and the response of the early-JA-biosynthesis mutant dde2–2 and the JA-signalling mutant coi1–16 confirmed this result. JA levels early change during TCL-culture, and JA/JA-Ile is immunolocalized in AR-tips and xylogenic cells. The high AR-response of the late JA-biosynthesis mutant opr3 suggests a positive action also of 12-oxophytodienoic acid on AR-formation. The crosstalk between JA and ET-signalling by EIN3/EIL1 is critical for AR-formation, and involves a competitive modulation of xylogenesis. Xylogenesis is enhanced by a MeJA concentration repressing AR-formation, and is positively related to ARF17 expression. Conclusions: The JA concentration-dependent role on AR-formation and xylogenesis, and the interaction with ET opens the way to applications in the micropropagation of recalcitrant species

In vivo silencing of genes coding for dTip60 chromatin remodeling complex subunits affects polytene chromosome organization and proper development in Drosophila melanogaster

Chromatin organization is developmentally regulated by epigenetic changes mediated by histone‐modifying enzymes and chromatin remodeling complexes. In Drosophila melanogaster, the Tip60 chromatin remodeling complex (dTip60) play roles in chromatin regulation, which are shared by evolutionarily‐related complexes identified in animal and plants. Recently, it was found that most subunits previously assigned to the dTip60 complex are shared by two related complexes, DOM‐A.C and DOM‐B.C, defined by DOM‐A and DOM‐B isoforms, respectively. In this work, we combined classical genetics, cell biology, and reverse genetics approaches to further investigate the biological roles played during Drosophila melanogaster development by a number of subunits originally assigned to the dTip60 complex

Cis-regulatory variation expands the colour palette of the Brassicaceae.

This article comments on: Ye S, Hua S, Ma T, Ma X, Chen Y, Wu L, Zhao L, Yi B, Ma C, Tu J, Shen J, Fu T, Wen J. 2022. Genetic and multi-omics analyses reveal BnaA07.PAP2In-184-317 as the key gene conferring anthocyanin-based color in Brassica napus flowers. Journal of Experimental Botany 73,6630–6645.</jats:p

Reliability of miRNA Analysis from Fixed and Paraffin-Embedded Tissues

In clinical practice, patients\u2019 tissues are fixed and paraffin-embedded in order to enable histological diagnosis. Nowadays, those tissues are also used for molecular characterization. Formalin is the most used fixative worldwide, and Bouin\u2019s solution in some worldwide institutions. Among molecular targets, micro RNAs (miRNAs), the single-stranded non-coding RNAs comprised of 18 to 24 nucleotides, have been demonstrated to be resistant to fixation and paraffin-embedding processes, with consequent possible application in clinical practice. In the present study, let-7e-5p, miR-423-3p, miR-92a-1-5p, miR-30d-5p, miR-155-5p, miR-200a-3p, and miR-429 were investigated in formalin and matched Bouin\u2019s solution-fixed tissues of high grade serous ovarian cancers by means of real-time and droplet digital PCR (ddPCR). Micro RNAs were detectable and analyzable in both formalin- and Bouin\u2019s-fixed specimens, but on average, higher Ct values and lower copies/\u3bcL were found in Bouin\u2019s-fixed samples. Data from formalin-fixed samples correlated significantly for most targets with Bouin\u2019s ones, except for let-7e-5p and miR-155-5p. This study shows that miRNAs are analyzable in both formalin- and Bouin\u2019s-fixed specimens, with the possibility, after proper data normalization, to compare miRNA-based data from formalin-fixed samples to those of Bouin\u2019s-fixed ones