Symmetry restrictions in chirality dependence of physical properties of single wall nanotubes

We investigate the chirality dependence of physical properties of nanotubes which are wrapped by the planar hexagonal lattice including graphite and boron nitride sheet, and reveal its symmetry origin. The observables under consideration are of scalar, vector and tensor types. These exact chirality dependence obtained are useful to verify the experimental and numerical results and propose accurate empirical formulas. Some important features of physical quantities can also be extracted by only considering the symmetry restrictions without complicated calculations.Comment: 5 pages, 1 figure

Stability of Strutinsky Shell Correction Energy in Relativistic Mean Field Theory

The single-particle spectrum obtained from the relativistic mean field (RMF) theory is used to extract the shell correction energy with the Strutinsky method. Considering the delicate balance between the plateau condition in the Strutinsky smoothing procedure and the convergence for the total binding energy, the proper space sizes used in solving the RMF equations are investigated in detail by taking 208Pb as an example. With the proper space sizes, almost the same shell correction energies are obtained by solving the RMF equations either on basis space or in coordinate space.Comment: 9 pages, 4 figure

DNMT gene expression and methylome in Marek’s disease resistant and susceptible chickens prior to and following infection by MDV

Marek’s disease (MD) is characterized as a T cell lymphoma induced by a cell-associated α-herpesvirus, Marek’s disease virus type 1 (MDV1). As with many viral infectious diseases, DNA methylation variations were observed in the progression of MD; these variations are thought to play an important role in host-virus interactions. We observed that DNA methyltransferase 3a (DNMT3a) and 3b (DNMT3b) were differentially expressed in chicken MD-resistant line 6(3) and MD-susceptible line 7(2) at 21 d after MDV infection. To better understand the role of methylation variation induced by MDV infection in both chicken lines, we mapped the genome-wide DNA methylation profiles in each line using Methyl-MAPS (methylation mapping analysis by paired-end sequencing). Collectively, the data sets collected in this study provide a more comprehensive picture of the chicken methylome. Overall, methylation levels were reduced in chickens from the resistant line 6(3) after MDV infection. We identified 11,512 infection-induced differential methylation regions (iDMRs). The number of iDMRs was larger in line 7(2) than in line 6(3), and most of iDMRs found in line 6(3) were overlapped with the iDMRs found in line 7(2). We further showed that in vitro methylation levels were associated with MDV replication, and found that MDV propagation in the infected cells was restricted by pharmacological inhibition of DNA methylation. Our results suggest that DNA methylation in the host may be associated with disease resistance or susceptibility. The methylation variations induced by viral infection may consequentially change the host transcriptome and result in diverse disease outcomes

The vitellogenesis-inhibiting hormone (SpVIH) of the crab Scylla paramamosain is not likely to have a vitellogenesis-inhibiting function in the ovary

The function and molecular characterization of the previously reported crab (Scylla paramamosain) vitellogenesis inhibiting hormone SpVIH is still unclear. In this experiment, SpVIH’s bioinformatic and functional characterizations were analyzed. Sequence analysis showed SpVIH was clustered with several type II MIH/GIHs of the Brachyura. The expression of SpVIH in the eyestalk was low in the early ovarian developmental stage I and increased with the advancement of ovary maturation. Interestingly, the SpVIH transcript was still at a high level in the ovary of females at the middle to late maturation stage. SpVIH’s function was studied according to the expression of vitellogenin (Vg) and vitellogenin receptor (VgR) in the ovary and hepatopancreas after incubation with SpVIH-dsRNA and recombinant SpVIH protein (rSpVIH). In vitro assay results indicated that rSpVIH has a significant stimulative effect on the expression of Vg in the hepatopancreas in the middle stage of vitellogenesis and in the ovary of each vitellogenesis stage. However, SpVIH-dsRNA has no significant effect on the expression of Vg when SpVIH-dsRNA is introduced to the ovary and hepatopancreas at the early, middle, and late stages of vitellogenesis. Furthermore, the co-incubation experiment result indicated that the eyestalk consists of factor(s) that can significantly up-regulate the expression of Vg in the ovary, with a further combination of dsVIH and eyestalk under incubation, the significant increase of Vg-mRNA expression levels were also found in the ovary of four ovarian development stages of S. paramamosain. Contrary to the previous reports, SpVIH does not possess a vitellogenesis-inhibiting function but can promote vitellogenesis in the ovary and hepatopancreas

The Origin of Separable States and Separability Criteria from Entanglement-breaking Channels

In this paper, we show that an arbitrary separable state can be the output of a certain entanglement-breaking channel corresponding exactly to the input of a maximally entangled state. A necessary and sufficient separability criterion and some sufficient separability criteria from entanglement-breaking channels are given.Comment: EBCs with trace-preserving and EBCs without trace-preserving are separately discusse

A novel HLA-B18 restricted CD8+ T cell epitope is efficiently cross-presented by dendritic cells from soluble tumor antigen

NY-ESO-1 has been a major target of many immunotherapy trials because it is expressed by various cancers and is highly immunogenic. In this study, we have identified a novel HLA-B*1801-restricted CD8<sup>+</sup>T cell epitope, NY-ESO-1<sub>88–96</sub> (LEFYLAMPF) and compared its direct- and cross-presentation to that of the reported NY-ESO-1<sub>157–165</sub> epitope restricted to HLA-A*0201. Although both epitopes were readily cross-presented by DCs exposed to various forms of full-length NY-ESO-1 antigen, remarkably NY-ESO-1<sub>88–96</sub> is much more efficiently cross-presented from the soluble form, than NY-ESO-1<sub>157–165</sub>. On the other hand, NY-ESO-1<sub>157–165</sub> is efficiently presented by NY-ESO-1-expressing tumor cells and its presentation was not enhanced by IFN-γ treatment, which induced immunoproteasome as demonstrated by Western blots and functionally a decreased presentation of Melan A<sub>26–35</sub>; whereas NY-ESO-1<sub>88–96</sub> was very inefficiently presented by the same tumor cell lines, except for one that expressed high level of immunoproteasome. It was only presented when the tumor cells were first IFN-γ treated, followed by infection with recombinant vaccinia virus encoding NY-ESO-1, which dramatically increased NY-ESO-1 expression. These data indicate that the presentation of NY-ESO-1<sub>88–96</sub> is immunoproteasome dependent. Furthermore, a survey was conducted on multiple samples collected from HLA-B18+ melanoma patients. Surprisingly, all the detectable responses to NY-ESO-1<sub>88–96</sub> from patients, including those who received NY-ESO-1 ISCOMATRIX™ vaccine were induced spontaneously. Taken together, these results imply that some epitopes can be inefficiently presented by tumor cells although the corresponding CD8<sup>+</sup>T cell responses are efficiently primed in vivo by DCs cross-presenting these epitopes. The potential implications for cancer vaccine strategies are further discussed

Open-source genomic analysis of Shiga-toxin–producing E. coli O104:H4

An outbreak caused by Shiga-toxin–producing Escherichia coli O104:H4 occurred in Germany in May and June of 2011, with more than 3000 persons infected. Here, we report a cluster of cases associated with a single family and describe an open-source genomic analysis of an isolate from one member of the family. This analysis involved the use of rapid, bench-top DNA sequencing technology, open-source data release, and prompt crowd-sourced analyses. In less than a week, these studies revealed that the outbreak strain belonged to an enteroaggregative E. coli lineage that had acquired genes for Shiga toxin 2 and for antibiotic resistance

Multiple SNP Set Analysis for Genome-Wide Association Studies Through Bayesian Latent Variable Selection

The power of genome-wide association studies (GWAS) for mapping complex traits with single SNP analysis may be undermined by modest SNP effect sizes, unobserved causal SNPs, correlation among adjacent SNPs, and SNP-SNP interactions. Alternative approaches for testing the association between a single SNP-set and individual phenotypes have been shown to be promising for improving the power of GWAS. We propose a Bayesian latent variable selection (BLVS) method to simultaneously model the joint association mapping between a large number of SNP-sets and complex traits. Compared to single SNP-set analysis, such joint association mapping not only accounts for the correlation among SNP-sets, but also is capable of detecting causal SNP-sets that are marginally uncorrelated with traits. The spike-slab prior assigned to the effects of SNP-sets can greatly reduce the dimension of effective SNP-sets, while speeding up computation. An efficient MCMC algorithm is developed. Simulations demonstrate that BLVS outperforms several competing variable selection methods in some important scenarios

Performance enhancement of horizontal extension and thermal energy storage to an abandoned exploitation well and satellite LNG station integrated ORC system

Tens of millions of abandoned exploitation wells (AEW) exist throughout the world, posing a threat to the environment and costing extra investment for decommissioning. Revitalization of the AEW offers a cost-effective solution for geothermal energy exploitation by saving the high costs of decommissioning and drilling. However, the thermal resources from AEW are usually of low and medium grade. Measures should be taken to increase the efficiency of AEW geothermal power plants. Meanwhile, the regasification process of satellite liquified natural gas (LNG) stations worldwide suffer from a loss of high-grade cold energy. Various studies have used geothermal heat and LNG cold to produce electricity, yet the horizontal extension of the AEW that may increase the recovered temperature, and the fluctuation of the LNG flow that may reduce the power output, were not discussed. This study proposes and evaluates a novel integrated organic Rankine cycle (ORC) system that uses the geothermal heat from the AEWs and waste LNG cold energy from satellite LNG stations, focusing on the performance enhancement of horizontal extension to increase the geothermal temperature and thermal energy storage to stabilize the LNG cold energy supply. A numerical model is developed that considers the horizontal extension in the AEW, and the horizontal extension is found to significantly increase the geothermal fluid temperature. A machine learning-based predictive model is built to assess the AEW outlet temperature under given parameters and working conditions. Cold thermal energy storage (CTES) modules are designed and optimized to stabilize the waste cold energy recovery when exposed to highly fluctuating LNG supply during off-design operation. CTES increased the ORC efficiency by 38.5% and has the potential to significantly shorten the payback period. Therefore, by utilizing the horizontal extension of the AEW and combining the power generation with LNG cold through thermal energy storage, the zero-emission geothermal and waste cold energy-based system can be a viable solution for future AEW revitalization and LNG waste cold energy utilization