Coral recruits are highly sensitive to heavy fuel oil exposure both in the presence and absence of UV light

Oil pollution remains a prominent local hazard to coral reefs, but the sensitivity of some coral life stages to oil exposure remains unstudied. Exposure to ultraviolet radiation (UVR), ubiquitous on coral reefs, may significantly increase oil toxicity towards these critical habitat-forming taxa. Here we present the first data on the sensitivity of two distinct post-settlement life stages of the model coral species Acropora millepora to a heavy fuel oil (HFO) water accommodated fraction (WAF) in the absence and presence of UVR. Assessment of lethal and sublethal endpoints indicates that both 1-week-old and 2-month-old recruits (1-wo and 2-mo) were negatively affected by chronic exposures to HFO (7 and 14 days, respectively). Relative growth (1-wo and 2-mo recruits) and survival (1-wo recruits) at end of exposure were the most sensitive endpoints in the absence of UVR, with no effect concentrations (NEC) of 34.3, 5.7 and 29.3 μg L-1 total aromatic hydrocarbons (TAH; ∑39 monocyclic- and polycyclic aromatic hydrocarbons), respectively. On average, UVR increased the negative effects by 10% for affected endpoints, and latent effects of exposure were evident for relative growth and symbiont uptake of recruits. Other sublethal endpoints, including maximum quantum yield and tissue colour score, were unaffected by chronic HFO exposure. A comparison of putative species-specific sensitivity constants for these ecologically relevant endpoints, indicates A. millepora recruits may be as sensitive as the most sensitive species currently included in oil toxicity databases. While the low intensity UVR only significantly increased the negative effects of the oil for one endpoint, the majority of endpoints showed trends towards increased toxicity in the presence of UVR. Therefore, the data presented here further support the standard incorporation of UVR in oil toxicity testing for tropical corals

The effects of ultraviolet radiation and climate on oil toxicity to coral reef organisms – a review

Oil pollution remains a significant local threat to shallow tropical coral reef environments, but the environmental conditions typical of coral reefs are rarely considered in oil toxicity testing and risk assessments. Here we review the effects of three environmental co-factors on petroleum oil toxicity towards coral reef organisms, and show that the impacts of oil pollution on coral reef taxa can be exacerbated by environmental conditions commonly encountered in tropical reef environments. Shallow reefs are routinely exposed to high levels of ultraviolet radiation (UVR), which can substantially increase the toxicity of some oil components through phototoxicity. Exposure to UVR represents the most likely and harmful environmental co-factor reviewed here, leading to an average toxicity increase of 7.2-fold across all tests reviewed. The clear relevance of UVR co-exposure and its strong influence on tropical reef oil toxicity highlights the need to account for UVR as a standard practice in future oil toxicity studies. Indeed, quantifying the influence of UVR on toxic thresholds of oil to coral reef species is essential to develop credible oil spill risk models required for oil extraction developments, shipping management and spill responses in the tropics. The few studies available indicate that co-exposure to elevated temperature and low pH, both within the range of current daily and seasonal fluctuations and/or projected under continued climate change, can increase oil toxicity on average by 3.0- and 1.3-fold, respectively. While all three of the reviewed environmental co-factors have the potential to substantially increase the impacts of oil pollution in shallow reef environments, their simultaneous effects have not been investigated. Assessments of the combined effects of oil pollution, UVR, temperature and low pH will become increasingly important to identify realistic hazard thresholds suitable for future risk assessments over the coming century

Comparative sensitivity of the early life stages of a coral to heavy fuel oil and UV radiation

During an oil spill, shallow, tropical coral reefs are likely to be simultaneously exposed to high intensities of ultraviolet radiation (UVR), which can exacerbate the toxicity of petroleum oils. While successful recruitment of corals is critical for reef recovery following disturbances, the sensitivity of several early life stages of coral to petroleum hydrocarbons has not been investigated, particularly for UVR co-exposure. Here we present the first dataset on the relative sensitivity of three early life stages (gametes, embryos and planula larvae) in a model broadcast spawning coral species, Acropora millepora, to the dissolved fraction of a heavy fuel oil (HFO), both in the absence and presence of UVR. All early life stages were negatively impacted by HFO exposure but exhibited distinct sensitivities. Larval metamorphosis was the most sensitive endpoint assessed with a 10% effect concentration of 34 μg L−1 total aromatic hydrocarbons (TAH) in the absence of UVR. The impact on fertilisation success was highly dependent on sperm density, while the fragmentation of embryos masked embryo mortality. Larval metamorphosis was conclusively the most reliable endpoint for use in risk assessments of the endpoints investigated. Putative critical target lipid body burdens (CTLBBs) were calculated for each life stages, enabling a comparison of their sensitivities against species in the Target Lipid Model (TLM) database. A. millepora had a putative CTLBB of 4.4 μmol g−1 octanol for larval metamorphosis, indicating it is more sensitive than any species currently included in the TLM database. Coexposure to UVR reduced toxicity thresholds by 1.3-fold on average across the investigated life stages and endpoints. This increase in sensitivity in the presence of UVR highlights the need to incorporate UVR co-exposure (where ecologically relevant) when assessing oil toxicity thresholds, otherwise the risks posed by oil spills to shallow coral reefs are likely to be underestimated

Ordering in voter models on networks: Exact reduction to a single-coordinate diffusion

We study the voter model and related random-copying processes on arbitrarily complex network structures. Through a representation of the dynamics as a particle reaction process, we show that a quantity measuring the degree of order in a finite system is, under certain conditions, exactly governed by a universal diffusion equation. Whenever this reduction occurs, the details of the network structure and random-copying process affect only a single parameter in the diffusion equation. The validity of the reduction can be established with considerably less information than one might expect: it suffices to know just two characteristic timescales within the dynamics of a single pair of reacting particles. We develop methods to identify these timescales, and apply them to deterministic and random network structures. We focus in particular on how the ordering time is affected by degree correlations, since such effects are hard to access by existing theoretical approaches.Comment: 37 pages, 10 figures. Revised version with additional discussion and simulation results to appear in J Phys

Flux Lattice Melting and Lowest Landau Level Fluctuations

We discuss the influence of lowest Landau level (LLL) fluctuations near H_{c2}(T) on flux lattice melting in YBa$_2$Cu$_3$O$_{7-\delta}$ (YBCO). We show that the specific heat step of the flux lattice melting transition in YBCO single crystals can be attributed largely to the degrees of freedom associated with LLL fluctuations. These degrees of freedom have already been shown to account for most of the latent heat. We also show that these results are a consequence of the correspondence between flux lattice melting and the onset of LLL fluctuations.Comment: 4 pages, 2 embedded figure

Monte-Carlo calculation of longitudinal and transverse resistivities in a model Type-II superconductor

We study the effect of a transport current on the vortex-line lattice in isotropic type-II superconductors in the presence of strong thermal fluctuations by means of 'driven-diffusion' Monte Carlo simulations of a discretized London theory with finite magnetic penetration depth. We calculate the current-voltage (I-V) characteristics for various temperatures, for transverse as well as longitudinal currents I. From these characteristics, we estimate the linear resistivities R_xx=R_yy and R_zz and compare these with equilibrium results for the vortex-lattice structure factor and the helicity moduli. From this comparison a consistent picture arises, in which the melting of the flux-line lattice occurs in two stages for the system size considered. In the first stage of the melting, at a temperature T_m, the structure factor drops to zero and R_xx becomes finite. For a higher temperature T_z, the second stage takes place, in which the longitudinal superconducting coherence is lost, and R_zz becomes finite as well. We compare our results with related recent numerical work and experiments on cuprate superconductors.Comment: 4 pages, with eps figure

Topological phase-fluctuations, amplitude fluctuations, and criticality in extreme type-II superconductors

We study the effect of critical fluctuations on the $(B,T)$ phase diagram in extreme type-II superconductors in zero and finite magnetic field using large-scale Monte Carlo simulations on the Ginzburg-Landau model in a frozen gauge approximation. We show that a vortex-loop unbinding gives a correct picture of the zero field superconducting-normal transition even in the presence of amplitude fluctuations, which are far from being critical at $T_c$. We extract critical exponents of the dual model by studying the topological excitations of the original model. From the vortex-loop distribution function we extract the anomalous dimension of the dual field $\eta \simeq -0.18$, and conclude that the charged Ginzburg-Landau model and the neutral 3DXY model belong to different universality classes. We find are two distinct scaling regimes for the vortex-line lattice melting line: a high-field scaling regime and a distinct low-field 3DXY critical scaling regime. We also find indications of an abrupt change in the connectivity of the vortex-tangle in the vortex liquid along a line $T_L \geq T_M$. This is the finite field counter-part of the zero-field vortex-loop blowout. Which at low enough fields appears to coincide with $T_M$. Here, a description of the vortex system only in terms of field induced vortex lines is inadequate at and above the VLL melting temperature.Comment: 30 pages, 14 figure

Effects of columnar disorder on flux-lattice melting in high-temperature superconductors

The effect of columnar pins on the flux-lines melting transition in high-temperature superconductors is studied using Path Integral Monte Carlo simulations. We highlight the similarities and differences in the effects of columnar disorder on the melting transition in YBa$_2$Cu$_3$O$_{7-\delta}$ (YBCO) and the highly anisotropic Bi$_2$Sr$_2$CaCu$_2$O$_{8+\delta}$ (BSCCO) at magnetic fields such that the mean separation between flux-lines is smaller than the penetration length. For pure systems, a first order transition from a flux-line solid to a liquid phase is seen as the temperature is increased. When adding columnar defects to the system, the transition temperature is not affected in both materials as long as the strength of an individual columnar defect (expressed as a flux-line defect interaction) is less than a certain threshold for a given density of randomly distributed columnar pins. This threshold strength is lower for YBCO than for BSCCO. For higher strengths the transition line is shifted for both materials towards higher temperatures, and the sharp jump in energy, characteristic of a first order transition, gives way to a smoother and gradual rise of the energy, characteristic of a second order transition. Also, when columnar defects are present, the vortex solid phase is replaced by a pinned Bose glass phase and this is manifested by a marked decrease in translational order and orientational order as measured by the appropriate structure factors. For BSCCO, we report an unusual rise of the translational order and the hexatic order just before the melting transition. No such rise is observed in YBCO.Comment: 32 pages, 13 figures, revte

Bacterial microevolution and the Pangenome

The comparison of multiple genome sequences sampled from a bacterial population reveals considerable diversity in both the core and the accessory parts of the pangenome. This diversity can be analysed in terms of microevolutionary events that took place since the genomes shared a common ancestor, especially deletion, duplication, and recombination. We review the basic modelling ingredients used implicitly or explicitly when performing such a pangenome analysis. In particular, we describe a basic neutral phylogenetic framework of bacterial pangenome microevolution, which is not incompatible with evaluating the role of natural selection. We survey the different ways in which pangenome data is summarised in order to be included in microevolutionary models, as well as the main methodological approaches that have been proposed to reconstruct pangenome microevolutionary history

Strong signature of natural selection within an FHIT intron implicated in prostate cancer risk

Previously, a candidate gene linkage approach on brother pairs affected with prostate cancer identified a locus of prostate cancer susceptibility at D3S1234 within the fragile histidine triad gene (FHIT), a tumor suppressor that induces apoptosis. Subsequent association tests on 16 SNPs spanning approximately 381 kb surrounding D3S1234 in Americans of European descent revealed significant evidence of association for a single SNP within intron 5 of FHIT. In the current study, resequencing and genotyping within a 28.5 kb region surrounding this SNP further delineated the association with prostate cancer risk to a 15 kb region. Multiple SNPs in sequences under evolutionary constraint within intron 5 of FHIT defined several related haplotypes with an increased risk of prostate cancer in European-Americans. Strong associations were detected for a risk haplotype defined by SNPs 138543, 142413, and 152494 in all cases (Pearson's χ2 = 12.34, df 1, P = 0.00045) and for the homozygous risk haplotype defined by SNPs 144716, 142413, and 148444 in cases that shared 2 alleles identical by descent with their affected brothers (Pearson's χ2 = 11.50, df 1, P = 0.00070). In addition to highly conserved sequences encompassing SNPs 148444 and 152413, population studies revealed strong signatures of natural selection for a 1 kb window covering the SNP 144716 in two human populations, the European American (π = 0.0072, Tajima's D= 3.31, 14 SNPs) and the Japanese (π = 0.0049, Fay & Wu's H = 8.05, 14 SNPs), as well as in chimpanzees (Fay & Wu's H = 8.62, 12 SNPs). These results strongly support the involvement of the FHIT intronic region in an increased risk of prostate cancer. © 2008 Ding et al