On characteristic polynomials for a generalized chiral random matrix ensemble with a source

We evaluate averages involving characteristic polynomials, inverse characteristic polynomials and ratios of characteristic polynomials for a $N\times N$ random matrix taken from a $L$-deformed Chiral Gaussian Unitary Ensemble with an external source $\Omega$. Relation to a recently studied statistics of bi-orthogonal eigenvectors in the complex Ginibre ensemble, see Y.V. Fyodorov arXiv:1710.04699, is briefly discussed as a motivation to study asymptotics of these objects in the case of external source proportional to the identity matrix. In particular, for an associated 'complex bulk/chiral edge' scaling regime we retrieve the kernel related to Bessel/Macdonald functions.Comment: published versio

Structural Order for One-Scale and Two-Scale Potentials

We perform molecular dynamics simulations to investigate the relationship between structural order and water-like dynamic and thermodynamic anomalies in spherically-symmetric potentials having either one or two characteristic length scales. %The first potential has only one length scale which is the diameter of the ramp %without the hard core, and the second potential has two length scales: one is the %diameter of a ramp(softcore) and another one is the diameter of a %hard core with a ratio of 1.76. Structural order is characterized by translational and orientational order parameters. %analogous to those used in previous cases for water and %silica.Only the two-scale ramp potential exhibits properties %remarkably similar to those found for water and silica regarding the %relationship between structural order, dynamic anomalies, and thermodynamic %anomalies. We find that (i) dynamic and thermodynamic anomalies exist for both one-scale and two-scale ramp potentials, and (ii) water-like structural order anomalies exist only for the two-scale ramp potential. Our findings suggest that the water-like relationship between structural order and anomalies is related to the presence of two different length scales in the potential.Comment: 12 pages, 5 figure

Structure of the First and Second Neighbor Shells of Water: Quantitative Relation with Translational and Orientational Order

We perform molecular dynamics simulation of water using the TIP5P model to quantify structural order in both the first shell (defined by four nearest neighbors)and second shell (defined by twelve next-nearest neighbors) of a central water molecule. We find the anomalous decrease of orientational order upon compression occurs in both shells, but the anomalous decrease of translational order upon compression occurs {\it mainly in the second shell}. The decreases of translational and orientational orders upon compression ("structural anomaly") are thus correlated only in the second shell. Our findings quantitatively confirm the qualitative idea that the thermodynamic, dynamic and structural anomalies of water are related to changes in the second shell upon compression.Comment: 12 pages, 5 figure

A Family of Tunable Spherically-Symmetric Potentials that Span the Range from Hard Spheres to Water-like Behavior

We investigate the equation of state, diffusion coefficient, and structural order of a family of spherically-symmetric potentials consisting of a hard core and a linear repulsive ramp. This generic potential has two characteristic length scales: the hard and soft core diameters. The family of potentials is generated by varying their ratio, $\lambda$. We find negative thermal expansion (thermodynamic anomaly) and an increase of the diffusion coefficient upon isothermal compression (dynamic anomaly) for $0\leq\lambda<6/7$. As in water, the regions where these anomalies occur are nested domes in the ($T, \rho$) or ($T, P$) planes, with the thermodynamic anomaly dome contained entirely within the dynamic anomaly dome. We calculate translational and orientational order parameters ($t$ and $Q_6$), and project equilibrium state points onto the ($t, Q_6$) plane, or order map. The order map evolves from water-like behavior to hard-sphere-like behavior upon varying $\lambda$ between 4/7 and 6/7. Thus, we traverse the range of liquid behavior encompassed by hard spheres ($\lambda=1$) and water-like ($\lambda\sim4/7$) with a family of tunable spherically-symmetric potentials by simply varying the ratio of hard to soft-core diameters. Although dynamic and thermodynamic anomalies occur almost across the entire range $0\leq\lambda\leq1$, water-like structural anomalies (i.e., decrease in both $t$ and $Q_6$ upon compression and strictly correlated $t$ and $Q_6$ in the anomalous region) occur only around $\lambda=4/7$. Water-like anomalies in structure, dynamics and thermodynamics arise solely due to the existence of two length scales, orientation-dependent interactions being absent by design.Comment: total 21 pages, 6 figure

Artificial membrane-like environments for in vitro studies of purified G-protein coupled receptors

AbstractFunctional reconstitution of transmembrane proteins remains a significant barrier to their biochemical, biophysical, and structural characterization. Studies of seven-transmembrane G-protein coupled receptors (GPCRs) in vitro are particularly challenging because, ideally, they require access to the receptor on both sides of the membrane as well as within the plane of the membrane. However, understanding the structure and function of these receptors at the molecular level within a native-like environment will have a large impact both on basic knowledge of cell signaling and on pharmacological research. The goal of this article is to review the main classes of membrane mimics that have been, or could be, used for functional reconstitution of GPCRs. These include the use of micelles, bicelles, lipid vesicles, nanodiscs, lipidic cubic phases, and planar lipid membranes. Each of these approaches is evaluated with respect to its fundamental advantages and limitations and its applications in the field of GPCR research. This article is part of a Special Issue entitled: Membrane protein structure and function