Exploration of Antiviral Effects of RNA-dependent RNA Polymerases 3, 4 and 5 in Arabidopsis.

Small RNAs play a number of vital roles in plants, including viral resistance. A particular class of small RNA that regulates plant defense from pathogens, among other functions, is known as small interfering RNAs (siRNAs). A key player in the biogenesis pathway of siRNAs are RNA-Dependent RNA Polymerases (RDRs). There are six RDR proteins in Arabidopsis thaliana, three of which have well documented roles (RDRs 1, 2 and 6), and three of which have no documented role. Here, we look at the functions of the unstudied RDRs, RDRs 3, 4 and 5, to see whether they affect antiviral resistance

Analysis of the Variables Affecting Plant Species Richness in Deserts

There are many hypotheses that attempt to explain patterns of species diversity in different environments. Deserts are a great place to study changes in species richness because they are relatively nutrient bare and exhibit low precipitation. This barebones environment means that slight shifts in climate and geography may lead to clear changes in species richness. We investigate how temperature, precipitation, water and light availability, latitude, elevation and other variables affect plant species richness in 20 deserts

The complete mitogenome of the invasive Japanese mud snail Batillaria attramentaria (Gastropoda: Batillariidae) from Elkhorn Slough, California, USA

Genomic analysis of the invasive marine snail Batillaria attramentaria from Elkhorn Slough, Moss Landing, California, USA using 150 bp paired-end Illumina sequences resulted in the assembly of its complete mitogenome. The mitogenome is 16,095 bp in length and contains 2 rRNA, 13 protein-coding, and 22 tRNA genes (GenBank Accession MN557850). Gene content and organization of B. attramentaria are identical to the Turritellidae and Pachychilidae. The phylogenetic analysis of B. attramentaria resolves it in a fully supported clade with these same two families in the superfamily Cerithioidea. Nucleotide BLAST searches of the Elkhorn Slough cox1 gene of B. attramentaria yielded identical sequences from invasive populations from California and British Columbia, and native populations from northeastern and central Japan. These data show that mitogenome sequencing is a useful tool for studying the classification and phylogenetic history Cerithioidea

The complete mitochondrial and plastid genomes of Corallina chilensis (Corallinaceae, Rhodophyta) from Tomales Bay, California, USA

Genomic analysis of the marine alga Corallina chilensis from Tomales Bay, California, USA, resulted in the assembly of its complete mitogenome (GenBank accession number MK598844) and plastid genome (GenBank MK598845). The mitogenome is 25,895 bp in length and contains 50 genes. The plastid genome is 178,350 bp and contains 233 genes. The organellar genomes share a high-level of gene synteny to other Corallinales. Comparison of rbcL and cox1 gene sequences of C. chilensis from Tomales Bay reveals it is identical to three specimens from British Columbia, Canada and very similar to a specimen of C. chilensis from southern California. These genetic data confirm that C. chilensis is distributed in Pacific North America