1 research outputs found
Statistical mechanics of RNA folding: importance of alphabet size
We construct a minimalist model of RNA secondary-structure formation and use
it to study the mapping from sequence to structure. There are strong,
qualitative differences between two-letter and four or six-letter alphabets.
With only two kinds of bases, there are many alternate folding configurations,
yielding thermodynamically stable ground-states only for a small set of
structures of high designability, i.e., total number of associated sequences.
In contrast, sequences made from four bases, as found in nature, or six bases
have far fewer competing folding configurations, resulting in a much greater
average stability of the ground state.Comment: 7 figures; uses revtex