256 research outputs found

    The Pediatric Cell Atlas: defining the growth phase of human development at single-cell resolution

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    Single-cell gene expression analyses of mammalian tissues have uncovered profound stage-specific molecular regulatory phenomena that have changed the understanding of unique cell types and signaling pathways critical for lineage determination, morphogenesis, and growth. We discuss here the case for a Pediatric Cell Atlas as part of the Human Cell Atlas consortium to provide single-cell profiles and spatial characterization of gene expression across human tissues and organs. Such data will complement adult and developmentally focused HCA projects to provide a rich cytogenomic framework for understanding not only pediatric health and disease but also environmental and genetic impacts across the human lifespan

    Doenças neurológicas de ovinos na região central do Rio Grande do Sul

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    Neste trabalho sĂŁo descritos aspectos epidemiolĂłgicos e clinico-patolĂłgicos das principais doenças neurolĂłgicas de ovinos diagnosticadas no LaboratĂłrio de Patologia VeterinĂĄria (LPV) da Universidade Federal de Santa Maria (UFSM) no perĂ­odo entre 1990 e 2007. A partir de uma busca nos arquivos do LPV-UFSM foram encontrados 586 exames de ovinos correspondentes a necropsias realizadas no laboratĂłrio ou a exames de amostras remetidas por veterinĂĄrios de campo. Sessenta e nove casos experimentais foram excluĂ­dos do estudo. Os 517 casos restantes eram compostos de 361 casos (69,8%) com diagnĂłstico conclusivo e 156 casos (30,2%) com diagnĂłstico inconclusivo. Ovinos morreram em decorrĂȘncia de doença neurolĂłgica em 58 casos (16%) do grupo com diagnĂłstico conclusivo. As doenças diagnosticadas mais frequentemente foram cenurose (15 casos ou 25,8%), listeriose (nove casos ou 15,5%), tĂ©tano (oito casos ou 13,7%), abscessos vertebrais (quatro casos ou 6,8%) e abscessos encefĂĄlicos (trĂȘs casos ou 5,1%). Intoxicação por Erytroxylum argentinum, mielite supurativa pĂłs-caudectomia, meningoencefalite fibrino-supurativa, polioencefalomalacia e raiva (dois casos ou 3,4% cada) foram ocasionalmente diagnosticadas. Desmielinização medular, edema da substĂąncia branca encefĂĄlica, encefalomalacia focal simĂ©trica, hidranencefalia, hipoplasia cerebelar, intoxicação por organofosforado, intoxicação por Solanum pseudocapsicum, mielite fibrino-supurativa e provĂĄvel intoxicação por closantel (um caso ou 1,7% cada) foram raramente observadas.A retrospective study of neurological diseases of sheep in southern Brazil was conducted over an 18-year period (1990-2007). A data base search was carried out in the files of the Laboratory of Veterinary Pathology (LPV) of the Universidade Federal de Santa Maria (UFSM), central Rio Grande do Sul state, Brazil. A total of 586 sheep were examined. These cases corresponded to necropsies performed in the LPV-UFSM or to mailed in samples from practitioners. Out of these, 69 experimental cases were excluded from this study. The remaining 517 cases were composed of 361 (69.8%) cases with conclusive diagnoses and 156 (30.2%) cases with inconclusive diagnoses. In 58 (16%) occasions, sheep died in consequence of neurological disease. Most important diseases included coenurosis (15 cases or 25.8%), listeriosis (9 cases or 15.5%), tetanus (8 cases or 13.7%), vertebral abscesses (4 cases or 6.8%), and cerebral abscesses (3 cases or 5.1%). Poisoning by Erytroxylum argentinum, post-caudectomy suppurative myelitis, fibrinosuppurative meningoencephalitis, polioencephalomalacia, rabies (2 cases or 3.4% each) were occasionally diagnosed. Spinal cord demyelinization, encephalic white matter edema, focal symmetrical encephalomalacia, hydranencephalia, cerebellar hypoplasia, poisoning by organophosphate, poisoning by Solanum pseudocapsicum, fibrinosuppurative myelitis, and presumptive closantel toxicity (1 case or 1.7% each) were rarely seen

    A Survey of mid and large bodied mammals in NĂșcleo Caraguatatuba, Serra do Mar State Park, Brazil

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    NĂłs aplicamos tĂ©cnicas de amostragem complementares para obter uma lista de espĂ©cies de mamĂ­feros de mĂ©dio e grande porte no NĂșcleo Caraguatatuba, Parque Estadual da Serra do Mar, Brasil. As amostragens de campo realizaram-se nos meses de Maio e Setembro de 2011. Utilizou-se, censo ao longo de transectos (212,4 km), armadilhas fotogrĂĄficas (223,2 armadilhas-dias) e armadilhas de pegadas (478 armadilhas-dias). Foram obtidos registros de 18 espĂ©cies, pertencentes a 14 famĂ­lias e oito ordens. NĂłs registramos a presença de sete espĂ©cies consideradas ameaçadas no Estado de SĂŁo Paulo, incluindo primatas (Brachyteles arachnoides), Artiodactyla (Mazama americana e Tayassu pecari), Carnivora (Leopardus pardalis, Leopardus tigrinus e Puma concolor) e Perissodactyla (Tapirus terrestris). Com base em numa extrapolação da riqueza de espĂ©cies (First order jackknife) nĂłs prevemos que existem entre 19 e 32 espĂ©cies de mamĂ­feros de mĂ©dio e grande porte no NĂșcleo. Nosso Mammal Priority Index classificou o NĂșcleo Caraguatatuba como uma ĂĄrea de importĂąncia mĂ©dia para a conservação de mamĂ­feros de mĂ©dio e grande porte na Mata AtlĂąntica. Combinado com o nĂșmero e a diversidade de espĂ©cies registradas, nossos resultados demonstram que este NĂșcleo Ă© uma ĂĄrea importante para a conservação de mamĂ­feros no Estado.We applied complementary survey techniques to obtain a baseline species list of mid and large bodied mammals in NĂșcleo Caraguatatuba, Serra do Mar State park, Brazil. Between May and September 2011 we surveyed the community of mid and large bodied mammals using diurnal line transect census (212.4 km), camera-traps (223.2 camera-trap days) and track-stations (478 track-station days). A total of 18 species were recorded from 14 families in eight orders. We recorded the presence of seven species considered threatened in the State of SĂŁo Paulo, including Primates (Brachyteles arachnoides), Artiodactyla (Mazama cf. americana and Tayassu pecari), Carnivora (Leopardus pardalis, Leopardus tigrinus and Puma concolor) and Perissodactyla (Tapirus terrestris). Based on extrapolated (First order jackknife) species richness estimates we predict that there are between 19 and 32 species of mid and large bodied mammals in the NĂșcleo. Our revised Mammal Priority Index ranked NĂșcleo Caraguatatuba as being of medium overall importance for the conservation of mid and large bodied mammals in the Atlantic Forest. Combined with the number and diversity of species recorded, our results demonstrate that this NĂșcleo is an important area for mammal conservation

    Measurement of the cross section for isolated-photon plus jet production in pp collisions at √s=13 TeV using the ATLAS detector

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    The dynamics of isolated-photon production in association with a jet in proton–proton collisions at a centre-of-mass energy of 13 TeV are studied with the ATLAS detector at the LHC using a dataset with an integrated luminosity of 3.2 fb−1. Photons are required to have transverse energies above 125 GeV. Jets are identified using the anti- algorithm with radius parameter and required to have transverse momenta above 100 GeV. Measurements of isolated-photon plus jet cross sections are presented as functions of the leading-photon transverse energy, the leading-jet transverse momentum, the azimuthal angular separation between the photon and the jet, the photon–jet invariant mass and the scattering angle in the photon–jet centre-of-mass system. Tree-level plus parton-shower predictions from Sherpa and Pythia as well as next-to-leading-order QCD predictions from Jetphox and Sherpa are compared to the measurements

    Measurement of the View the tt production cross-section using eÎŒ events with b-tagged jets in pp collisions at √s = 13 TeV with the ATLAS detector

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    This paper describes a measurement of the inclusive top quark pair production cross-section (σttÂŻ) with a data sample of 3.2 fb−1 of proton–proton collisions at a centre-of-mass energy of √s = 13 TeV, collected in 2015 by the ATLAS detector at the LHC. This measurement uses events with an opposite-charge electron–muon pair in the final state. Jets containing b-quarks are tagged using an algorithm based on track impact parameters and reconstructed secondary vertices. The numbers of events with exactly one and exactly two b-tagged jets are counted and used to determine simultaneously σttÂŻ and the efficiency to reconstruct and b-tag a jet from a top quark decay, thereby minimising the associated systematic uncertainties. The cross-section is measured to be: σttÂŻ = 818 ± 8 (stat) ± 27 (syst) ± 19 (lumi) ± 12 (beam) pb, where the four uncertainties arise from data statistics, experimental and theoretical systematic effects, the integrated luminosity and the LHC beam energy, giving a total relative uncertainty of 4.4%. The result is consistent with theoretical QCD calculations at next-to-next-to-leading order. A fiducial measurement corresponding to the experimental acceptance of the leptons is also presented

    A search for resonances decaying into a Higgs boson and a new particle X in the XH → qqbb final state with the ATLAS detector

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    A search for heavy resonances decaying into a Higgs boson (H) and a new particle (X) is reported, utilizing 36.1 fb−1 of proton–proton collision data at collected during 2015 and 2016 with the ATLAS detector at the CERN Large Hadron Collider. The particle X is assumed to decay to a pair of light quarks, and the fully hadronic final state is analysed. The search considers the regime of high XH resonance masses, where the X and H bosons are both highly Lorentz-boosted and are each reconstructed using a single jet with large radius parameter. A two-dimensional phase space of XH mass versus X mass is scanned for evidence of a signal, over a range of XH resonance mass values between 1 TeV and 4 TeV, and for X particles with masses from 50 GeV to 1000 GeV. All search results are consistent with the expectations for the background due to Standard Model processes, and 95% CL upper limits are set, as a function of XH and X masses, on the production cross-section of the resonance

    Search for TeV-scale gravity signatures in high-mass final states with leptons and jets with the ATLAS detector at sqrt [ s ] = 13TeV

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    A search for physics beyond the Standard Model, in final states with at least one high transverse momentum charged lepton (electron or muon) and two additional high transverse momentum leptons or jets, is performed using 3.2 fb−1 of proton–proton collision data recorded by the ATLAS detector at the Large Hadron Collider in 2015 at √s = 13 TeV. The upper end of the distribution of the scalar sum of the transverse momenta of leptons and jets is sensitive to the production of high-mass objects. No excess of events beyond Standard Model predictions is observed. Exclusion limits are set for models of microscopic black holes with two to six extra dimensions

    The performance of the jet trigger for the ATLAS detector during 2011 data taking

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    The performance of the jet trigger for the ATLAS detector at the LHC during the 2011 data taking period is described. During 2011 the LHC provided proton–proton collisions with a centre-of-mass energy of 7 TeV and heavy ion collisions with a 2.76 TeV per nucleon–nucleon collision energy. The ATLAS trigger is a three level system designed to reduce the rate of events from the 40 MHz nominal maximum bunch crossing rate to the approximate 400 Hz which can be written to offline storage. The ATLAS jet trigger is the primary means for the online selection of events containing jets. Events are accepted by the trigger if they contain one or more jets above some transverse energy threshold. During 2011 data taking the jet trigger was fully efficient for jets with transverse energy above 25 GeV for triggers seeded randomly at Level 1. For triggers which require a jet to be identified at each of the three trigger levels, full efficiency is reached for offline jets with transverse energy above 60 GeV. Jets reconstructed in the final trigger level and corresponding to offline jets with transverse energy greater than 60 GeV, are reconstructed with a resolution in transverse energy with respect to offline jets, of better than 4 % in the central region and better than 2.5 % in the forward direction

    Search for dark matter produced in association with a hadronically decaying vector boson in pp collisions at sqrt (s) = 13 TeV with the ATLAS detector

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    A search is presented for dark matter produced in association with a hadronically decaying W or Z boson using 3.2 fb−1 of pp collisions at View the MathML sources=13 TeV recorded by the ATLAS detector at the Large Hadron Collider. Events with a hadronic jet compatible with a W or Z boson and with large missing transverse momentum are analysed. The data are consistent with the Standard Model predictions and are interpreted in terms of both an effective field theory and a simplified model containing dark matter
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