Relativistic description of 3He(e,e'p)2H

The Relativistic Distorted-Wave Impulse Approximation is used to describe the $^3$He($e,e^\prime p$)$^2$H process. We describe the $^3$He nucleus within the adiabatic hyperspherical expansion method with realistic nucleon-nucleon interactions. The overlap between the $^3$He and the deuteron wave functions can be accurately computed from a three-body calculation. The nucleons are described by solutions of the Dirac equation with scalar and vector (S-V) potentials. The wave function of the outgoing proton is obtained by solving the Dirac equation with a S-V optical potential fitted to elastic proton scattering data on the residual nucleus. Within this theoretical framework, we compute the cross section of the reaction and other observables like the transverse-longitudinal asymmetry, and compare them with the available experimental data measured at JLab.Comment: 4 pages, 3 figures. Proceedings of the 21st European Few Body Conference held in Salamanca (Spain) in August-September 201

Combination of DROOL rules and Protégé knowledge bases in the ONTO-H annotation tool

ONTO-H is a semi-automatic collaborative tool for the semantic annotation of documents, built as a Protégé 3.0 tab plug-in. Among its multiple functionalities aimed at easing the document annotation process, ONTO-H uses a rule-based system to create cascading annotations out from a single drag and drop operation from a part of a document into an already existing concept or instance of the domain ontology being used for annotation. It also gives support to the detection of name conflicts and instance duplications in the creation of the annotations. The rule system runs on top of the open source rule engine DROOLS and is connected to the domain ontology used for annotation by means of an ad-hoc programmed Java proxy

The baryon vertex with magnetic flux

In this letter we generalise the baryon vertex configuration of AdS/CFT by adding a suitable instantonic magnetic field on its worldvolume, dissolving D-string charge. A careful analysis of the configuration shows that there is an upper bound on the number of dissolved strings. This should be a manifestation of the stringy exclusion principle. We provide a microscopical description of this configuration in terms of a dielectric effect for the dissolved strings.Comment: 17 pages, 2 figures. V2: reference added. V3: version to appear in JHE

Comparison of greenhouse gas emissions from Mexican intensive dairy farms

The objectives of this study were to compare estimates of greenhouse gas emissions (GHG) as CH4 (enteric-manure), N2O (manure), and CO2 (fuel and energy use), the use of water and soil, the excretion of nutrients in manure, and feed efficiency from Mexican intensive dairy farms. Data from 26 dairy farms were analysed with a multivariable cluster analysis. Three grades of intensifications were identified (low, medium and high). Mathematical models were used to estimate GHG. Feed efficiency (kg milk per kg DMI) was better in high intensive production systems. Enteric methane was identified as the major source of GHG in all types of systems. High intensive dairies generated the lowest emissions of CH4, N2O and CO2 equivalent by unit of product, 18.6 g, 0.12 g and 828 g, respectively. Water footprint was lower in low intensive dairies using 427 L of water/L of milk. Cropland was highest in intensive systems but milk yield per area was better (30,938 kg/ha). Excretions of N, P, and K were lower in intensive dairies per kg of milk, at 13.2, 2.4, and 6.4 g, respectively. As intensification in the dairy system increased feed efficiency (kg milk/kg DMI) was better. Per unit of product (kg of milk), dairies with the highest intensification generated the lowest GHG emissions, nutrient excretion values and land and water use as compared to dairies with medium and low intensification. Increasing intensification and therefore feed efficiency of Mexican dairy systems could help to decrease GHG emissions, natural resources use and nutrient excretion.Keywords: Carbon footprint, environmental impact, methane, milk productio

Opacity calculation for target physics using the ABAKO/RAPCAL code

Radiative properties of hot dense plasmas remain a subject of current interest since they play an important role in inertial confinement fusion (ICF) research, as well as in studies on stellar physics. In particular, the understanding of ICF plasmas requires emissivities and opacities for both hydro-simulations and diagnostics. Nevertheless, the accurate calculation of these properties is still an open question and continuous efforts are being made to develop new models and numerical codes that can facilitate the evaluation of such properties. In this work the set of atomic models ABAKO/RAPCAL is presented, as well as a series of results for carbon and aluminum to show its capability for modeling the population kinetics of plasmas in both LTE and NLTE regimes. Also, the spectroscopic diagnostics of a laser-produced aluminum plasma using ABAKO/RAPCAL is discussed. Additionally, as an interesting application of these codes, fitting analytical formulas for Rosseland and Planck mean opacities for carbon plasmas are reported. These formulas are useful as input data in hydrodynamic simulation of targets where the computation task is so hard that in line computation with sophisticated opacity codes is prohibitive

Faunal behavior in response to near bottom water dynamics in a marine protected area (Cantabrian Sea, southern Bay of Biscay)

A set of lander deployments in a deep marine protected area (MPA; El Cachucho) combining environmental sensors and a baited camera provided insight on the relationship between faunal behavior and oceanographic dynamics. Landers were deployed at different depths, ranging from 500 to 960 m for a period of 24–26 h. A total of 10,989 photographs were downloaded and synchronized using a time code with all the environmental variables recorded (pressure, temperature, salinity, water current, and direction). Total richness accounted for 41 species of different taxonomic groups (21 fishes, 11 crustaceans, 6 echinoderms, and 3 molluscs). The most abundant species were Synaphobranchus kaupii, Mora moro, Phycis blennoides, Helicolenus dactylopterus, and Etmopterus spinax. Arrival times (Tarr) and maximum number of individuals (Nmax) greatly differed among stations. Cluster analysis showed two main faunal groups in relation to depth: those close to the top of the bank and those in the flanks. Species densities were estimated using Priede's equations and compared with those obtained in previous studies using trawl samplers. The relation of species with environmental variables showed high variability depending on the location of the station and the associated variables (depth, current, and water masses). Near-bottom dynamics were consistent with previously known oceanographic patterns at the bank, dominated by background anticyclonic recirculation along the flanks overlaid by strong tidal cycles. Current and hydrography tidally driven phases showed an evident effect in the arrival of species at some locations. Species appeared during specific periods matching the beginning of the flooding phase or end of the ebb phase. Movement rates (cm s−1) were estimated for some invertebrate species, such as crabs (Bathynectes maravigna, 0.66; Pagurus sp., 0.09), the gasteropod Colus gracilis (0.15), and echinoderms (Cidaris cidaris, 0.04; Araeosoma fenestratum, 0.23)

Quantum Deconstruction of a 5D SYM and its Moduli Space

We deconstruct the fifth dimension of the 5D SYM theory with SU(M) gauge symmetry and Chern-Simons level k=M and show how the 5D moduli space follows from the non-perturbative analysis of the 4D quiver theory. The 5D coupling h=1/(g_5)^2 of the un-broken SU(M) is allowed to take any non-negative values, but it cannot be continued to h<0 and there are no transitions to other phases of the theory. The alternative UV completions of the same 5D SYM -- via M theory on the C^3/Z_2M orbifold or via the dual five-brane web in type IIB string theory -- have identical moduli spaces: h >= 0 only, and no flop transitions. We claim these are intrinsic properties of the SU(M) SYM theory with k=M.Comment: 46 Page

Reproduction in the externally brooding sea anemone Epiactis georgiana in the Antarctic Peninsula and the Weddell Sea

14 pages, 8 figures, 2 tablesExternal parental care is uncommon among actiniarians but common in Epiactis species. Here, several aspects of reproduction are analyzed for of one of them, Epiactis georgiana. Samples were collected in December, January, February, March, and April in the Antarctic Peninsula and the eastern Weddell Sea, during 1998, 2000, 2002, and 2003. Most sexually mature individuals of E. georgiana are male or female, but some are hermaphrodites. This is the first report of hermaphroditism in E. georgiana, which is the third species of the genus with this sexual pattern. The results suggest that oogenesis starts in December and that at least two generations of oocytes overlap; a third generation is often brooded externally. Putative fertilization is likely internal, and larvae and/or embryos are externally brooded on the distal part of the adult column until an advanced developmental stage. Apparently E. georgiana reproduces seasonally, probably releasing the embryos/larvae in the last months of the austral spring (December). Inter-individual variability was observed in gametogenesis. In addition, specimens from the Antarctic Peninsula were larger than those from the Weddell Sea. This study represents the first step in understanding the reproductive mode of E. georgianaSpecial thanks are addressed to Prof. Dr. Wolf Arntz (Alfred-Wegener-Institute, Bremerhaven, Germany) who made possible our participation in several Antarctic projects and cruises. We extend our acknowledgements to the officers and crew of the R/V Polarstern and many colleagues on board during the EASIZ, ANDEEP, and BENDEX cruises for their valuable assistance. Thanks to M. Conradi (Universidad de Sevilla) who collected a considerable amount of the material analyzed in this manuscript. Comments from M. Daly, D. Fautin, and an anonymous reviewer substantially improved this manuscript. Support was provided by a MCT-CSICgrant (I3P-BPD2001-1) to E. Rodríguez and Spanish CICYT projects: ANT97-1533-E, ANT98-1739-E, ANT99-1608-E, REN2001-4269-E/ANT, REN2003-04236, and CGL2004-20141-E. This is a contribution to the SCAR program, Ecology of the Antarctic Sea Ice Zone (EASIZ) and ANDEEP contribution 159Peer reviewe

Genome-wide analysis of porcine backfat and intramuscular fat fatty acid composition using high-density genotyping and expression data

[EN] Background: Porcine fatty acid composition is a key factor for quality and nutritive value of pork. Several QTLs for fatty acid composition have been reported in diverse fat tissues. The results obtained so far seem to point out different genetic control of fatty acid composition conditional on the fat deposits. Those studies have been conducted using simple approaches and most of them focused on one single tissue. The first objective of the present study was to identify tissue-specific and tissue-consistent QTLs for fatty acid composition in backfat and intramuscular fat, combining linkage mapping and GWAS approaches and conducted under single and multitrait models. A second aim was to identify powerful candidate genes for these tissue-consistent QTLs, using microarray gene expression data and following a targeted genetical genomics approach. Results: The single model analyses, linkage and GWAS, revealed over 30 and 20 chromosomal regions, 24 of them identified here for the first time, specifically associated to the content of diverse fatty acids in BF and IMF, respectively. The analyses with multitrait models allowed identifying for the first time with a formal statistical approach seven different regions with pleiotropic effects on particular fatty acids in both fat deposits. The most relevant were found on SSC8 for C16:0 and C16:1(n-7) fatty acids, detected by both linkage and GWAS approaches. Other detected pleiotropic regions included one on SSC1 for C16:0, two on SSC4 for C16:0 and C18:2, one on SSC11 for C20:3 and the last one on SSC17 for C16:0. Finally, a targeted eQTL scan focused on regions showing tissue consistent effects was conducted with Longissimus and fat gene expression data. Some powerful candidate genes and regions were identified such as the PBX1, RGS4, TRIB3 and a transcription regulatory element close to ELOVL6 gene to be further studied. Conclusions: Complementary genome scans have confirmed several chromosome regions previously associated to fatty acid composition in backfat and intramuscular fat, but even more, to identify new ones. Although most of the detected regions were tissue-specific, supporting the hypothesis that the major part of genes affecting fatty acid composition differs among tissues, seven chromosomal regions showed tissue-consistent effects. Additional gene expression analyses have revealed powerful target regions to carry the mutation responsible for the pleiotropic effects.This work was funded by the MICINN project AGL2011-29821-C02 (Ministerio de Economia y Competitividad). We thank to Fabian Garcia, Anna Mercade and Carmen Barragan for their assistance in DNA preparation and SNP genotyping.Muñoz, M.; Rodríguez, MC.; Alves, E.; Folch, J.; Ibañez Escriche, N.; Silió, L.; Fernández, A. (2013). Genome-wide analysis of porcine backfat and intramuscular fat fatty acid composition using high-density genotyping and expression data. BMC Genomics. 14. https://doi.org/10.1186/1471-2164-14-845S14Lichtenstein, A. H. (2003). Dietary Fat and Cardiovascular Disease Risk: Quantity or Quality? Journal of Women’s Health, 12(2), 109-114. doi:10.1089/154099903321576493Jiménez-Colmenero, F., Ventanas, J., & Toldrá, F. (2010). Nutritional composition of dry-cured ham and its role in a healthy diet. Meat Science, 84(4), 585-593. doi:10.1016/j.meatsci.2009.10.029Webb, E. C., & O’Neill, H. A. (2008). The animal fat paradox and meat quality. Meat Science, 80(1), 28-36. doi:10.1016/j.meatsci.2008.05.029Wood, J. D., Enser, M., Fisher, A. V., Nute, G. R., Sheard, P. 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PLoS ONE, 4(8), e6524. doi:10.1371/journal.pone.0006524Corominas, J., Ramayo-Caldas, Y., Puig-Oliveras, A., Pérez-Montarelo, D., Noguera, J. L., Folch, J. M., & Ballester, M. (2013). Polymorphism in the ELOVL6 Gene Is Associated with a Major QTL Effect on Fatty Acid Composition in Pigs. PLoS ONE, 8(1), e53687. doi:10.1371/journal.pone.0053687Ponsuksili, S., Jonas, E., Murani, E., Phatsara, C., Srikanchai, T., Walz, C., … Wimmers, K. (2008). Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle. BMC Genomics, 9(1), 367. doi:10.1186/1471-2164-9-367Steibel, J. P., Bates, R. O., Rosa, G. J. M., Tempelman, R. J., Rilington, V. D., Ragavendran, A., … Ernst, C. W. (2011). Genome-Wide Linkage Analysis of Global Gene Expression in Loin Muscle Tissue Identifies Candidate Genes in Pigs. PLoS ONE, 6(2), e16766. doi:10.1371/journal.pone.0016766C�novas, A., Quintanilla, R., Amills, M., & Pena, R. 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Genetics, 171(2), 783-790. doi:10.1534/genetics.104.03669