Spectral Signature Databases and their Application/Misapplication to Modeling and Exploitation of Multispectral/hyperspectral Data

Spectral signature databases abound in the field of remote sensing. Scientists use these databases to assist in their analysis everyday. Many decisions are made about hyperspectral data and the observations made with this data based on the assumption that these databases contain “ground truth” representations of the signatures for materials sensed. For the most part, this is true if the team collecting the signatures that populate these databases follow sound practices when collecting this data. The data does, however, represent a very specific picture of the “truth”. Signatures found in databases represent a specific collection configuration or geometry. The source of illumination, whether it is artificial or natural, is in a very specific location as is the sensor used to collect radiance for the derivation of the reflectance signatures. A signature found in the database is useful for only a very specific scenario, one that matches the geometry used during ground truth collection. There are other very significant factors regarding illumination field and scattering properties of the material and reference standards that influence the computed reflectance signature. This work will illustrate some of the dramatic variation that can exist in the reflectance signatures derived for the same material using different techniques. Difference upward of 30% may exist for the same material. These observations are presented so that scientists who look to these databases in the future will consider very carefully the metadata that is presented with the signatures that they use to make sure they are applicable to the phenomenology and collection scenario that they have under study. These observations should also point out that signatures presented without detailed metadata could be very hazardous to use if the outcome of the analysis being performed relies upon the absolute reflectance spectra being known

DIAGNOSTIC ACCURACY OF IXIP INDEX AND PROSTATE MRI IN THE DIAGNOSIS OF PROSTATE CANCER: PRELIMINARY RESULTS ON A COMBINED APPROACH

The purpose of this study was to assess whether Immune CompleX Predictive Index (iXip) improves diagnostic accuracy of multiparametric prostate MRI (mpMRI) for clinically significant prostate cancer. This study included 72 patients (mean age: 68±8 years) with suspicion of prostate cancer and available iXip score. mpMRI images were evaluated by two radiologists according to the PI-RADS v2.1. Reference standard was based on fusion biopsy and standard transperineal 12-point biopsy. Diagnostic accuracy of iXip, mpMRI and their combination were calculated. Optimal cutoff of iXip with sensitivity and specificity was identified using the Youden index. Patients with clinically significant prostate cancers had significantly higher iXip values compared to patients without clinically significant prostate cancers (median 0.411 vs 0.273; p=0.026). The AUROC for iXip was 0.795 (95% CI 0.579-1.000, p=0.026). Sensitivity and specificity were 75% and 100% respectively for mpMRI alone, and 100% and 80% respectively for mpMRI combined with iXip > 0.375. The combination of mpMRI with a cutoff value of iXip > 0.375 has a very high sensitivity for the diagnosis of prostate cancer and a moderately high specificity

Megacollect 2004: Hyperspectral Collection Experiment of Terrestrial Targets and Backgrounds of the RIT Megascene and Surrounding Area (Rochester, NY)

This paper describes a collaborative collection campaign to spectrally image and measure a well characterized scene for hyperspectral algorithm development and validation/verification of scene simulation models (DIRSIG). The RIT Megascene, located in the northeast corner of Monroe County near Rochester, New York, has been modeled and characterized under the DIRSIG environment and has been simulated for various hyperspectral and multispectral systems (e.g., HYDICE, LANDSAT, etc.). Until recently, most of the electro-optical imagery of this area has been limited to very high altitude airborne or orbital platforms with low spatial resolutions. Megacollect 2004 addresses this shortcoming by bringing together, in June of 2004, a suite of airborne sensors to image this area in the VNIR, SWIR, MWIR, and LWIR regions. These include the COMPASS (hyperspectral VNIR,SWIR), SEBASS (hyperspectral LWIR), WASP (broadband VIS, SWIR, MWIR, LWIR) and MISI (hyperspectral VNIR, broadband SWIR, MWIR, LWIR). In conjunction with the airborne collections, an extensive ground truth measurement campaign was conducted to characterize atmospheric parameters, select targets, and backgrounds in the field. Laboratory measurements were also made on samples to confirm the field measurements. These spectral measurements spanned the visible and thermal region from 0.4 to 20 microns. These measurements will help identify imaging factors that affect algorithm robustness and areas of improvement in the physical modeling of scene/sensor phenomena. Reflectance panels have also been deployed as control targets to both quantify sensor characteristics and atmospheric effects. A subset of these targets have also been deployed as an independent test suite for target detection algorithms. Details of the planning, coordination, protocols, and execution of the campaign will be discussed with particular emphasis on the ground measurements. The system used to collect the metadata of ground truth measurements and disseminate this data will be described. Lastly, lessons learned in the field will be underscored to highlight additional measurements and changes in protocol to improve future collections of this area

A new Ultraluminous X-ray source in the galaxy NGC 5907

We report on the serendipitous discovery of a new transient in NGC 5907, at a peak luminosity of 6.4x10^{39} erg/s. The source was undetected in previous 2012 Chandra observations with a 3 sigma upper limit on the luminosity of 1.5x10^{38} erg/s, implying a flux increase of a factor of >35. We analyzed three recent 60ks/50ks Chandra and 50ks XMM-Newton observations, as well as all the available Swift observations performed between August 2017/March 2018. Until the first half of October 2017, Swift observations do not show any emission from the source. The transient entered the ULX regime in less than two weeks and its outburst was still on-going at the end of February 2018. The 0.3-10 keV spectrum is consistent with a single multicolour blackbody disc (kT~1.5 keV). The source might be a ~30 solar mass black hole accreting at the Eddington limit. However, although we did not find evidence of pulsations, we cannot rule-out the possibility that this ULX hosts an accreting neutron star.Comment: Accepted on MNRAS, 5 pages, 2 figure, 1 tabl

Obesity is not associated with disease-free interval, melanoma-specific survival, or overall survival in patients with clinical stage IB-II melanoma after SLNB

BACKGROUND AND OBJECTIVES: Clinicopathologic characteristics have prognostic value in clinical stage IB‐II patients with melanoma. Little is known about the prognostic value of obesity that has been associated with an increased risk for several cancer types and worsened prognosis after diagnosis. This study aims to examine effects of obesity on outcome in patients with clinical stage IB‐II melanoma. METHODS: Prospectively recorded data of patients with clinical stage IB‐II melanoma who underwent sentinel lymph node biopsy (SLNB) between 1995 and 2018 at the University Medical Center of Groningen were collected from medical files and retrospectively analyzed. Cox‐regression analyses were used to determine associations between obesity (body mass index> 30), tumor (location, histology, Breslow‐thickness, ulceration, mitotic rate, SLN‐status) and patient‐related variables (gender, age, and social‐economic‐status [SES]) and disease‐free interval (DFI), melanoma‐specific survival (MSS), and overall survival (OS). RESULTS: Of the 715 patients, 355 (49.7%) were women, median age was 55 (range 18.6‐89) years, 149 (20.8%) were obese. Obesity did not significantly affect DFI (adjusted hazard ratio [HR] = 1.40; 95% confidence interval [CI] = 0.98–2.00; p = 0.06), MSS (adjusted HR = 1.48;95%CI = 0.97–2.25; p = 0.07), and OS (adjusted HR = 1.25; 95% CI = 0.85–1.85; p = 0.25). Increased age, arm location, increased Breslow‐thickness, ulceration, increased mitotic rate, and positive SLN‐status were significantly associated with decreased DFI, MSS, and OS. Histology, sex, and SES were not associated. CONCLUSION: Obesity was not associated with DFI, MSS, or OS in patients with clinical stage IB‐II melanoma who underwent SLNB

Homogeneously derived transit timings for 17 exoplanets and reassessed TTV trends for WASP-12 and WASP-4

We homogeneously analyse ∼3.2 × 105 photometric measurements for ∼1100 transit lightcurves belonging to 17 exoplanet hosts. The photometric data cover 16 years 2004–2019 and include amateur and professional observations. Old archival lightcurves were reprocessed using up-to-date exoplanetary parameters and empirically debiased limb-darkening models. We also derive self-consistent transit and radial-velocity fits for 13 targets. We confirm the nonlinear TTV trend in the WASP-12 data at a high significance, and with a consistent magnitude. However, Doppler data reveal hints of a radial acceleration about ( − 7.5 ± 2.2) m/s/yr, indicating the presence of unseen distant companions, and suggesting that roughly 10 per cent of the observed TTV was induced via the light-travel (or Roemer) effect. For WASP-4, a similar TTV trend suspected after the recent TESS observations appears controversial and model-dependent. It is not supported by our homogeneus TTV sample, including 10 ground-based EXPANSION lightcurves obtained in 2018 simultaneously with TESS. Even if the TTV trend itself does exist in WASP-4, its magnitude and tidal nature are uncertain. Doppler data cannot entirely rule out the Roemer effect induced by possible distant companions

Discovery of a young low-mass brown dwarf transiting a fast-rotating F-type star by the Galactic Plane eXoplanet (GPX) survey

We announce the discovery of GPX-1 b, a transiting brown dwarf with a mass of $19.7\pm 1.6$ $M_{\mathrm{Jup}}$ and a radius of $1.47\pm0.10$ $R_{\mathrm{Jup}}$, the first sub-stellar object discovered by the Galactic Plane eXoplanet (GPX) survey. The brown dwarf transits a moderately bright ($V$ = 12.3 mag) fast-rotating F-type star with a projected rotational velocity $v\sin{ i_*}=40\pm10$ km/s. We use the isochrone placement algorithm to characterize the host star, which has effective temperature $7000\pm200$ K, mass $1.68\pm0.10$ $M_{\mathrm{Sun}}$, radius $1.56\pm0.10$ $R_{\mathrm{Sun}}$ and approximate age $0.27_{-0.15}^{+0.09}$ Gyr. GPX-1 b has an orbital period of $\sim$1.75 d, and a transit depth of $0.90\pm0.03$ %. We describe the GPX transit detection observations, subsequent photometric and speckle-interferometric follow-up observations, and SOPHIE spectroscopic measurements, which allowed us to establish the presence of a sub-stellar object around the host star. GPX-1 was observed at 30-min integrations by TESS in Sector 18, but the data is affected by blending with a 3.4 mag brighter star 42 arcsec away. GPX-1 b is one of about two dozen transiting brown dwarfs known to date, with a mass close to the theoretical brown dwarf/gas giant planet mass transition boundary. Since GPX-1 is a moderately bright and fast-rotating star, it can be followed-up by the means of Doppler tomography.Comment: 13 pages, 13 figures, accepted to MNRAS in May 202

A search for the afterglows, kilonovae, and host galaxies of two short GRBs: GRB 211106A and GRB 211227A

Context: GRB 211106A and GRB 211227A are recent gamma-ray bursts (GRBs) with initial X-ray positions suggesting associations with nearby galaxies (z < 0.7). Their prompt emission characteristics indicate GRB 211106A is a short-duration GRB and GRB 211227A is a short GRB with extended emission, likely originating from compact binary mergers. However, classifying solely based on prompt emission can be misleading. Aims: These short GRBs in the local Universe offer opportunities to search for associated kilonova (KN) emission and study host galaxy properties in detail. Methods: We conducted deep optical and NIR follow-up using ESO-VLT FORS2, HAWK-I, and MUSE for GRB 211106A, and ESO-VLT FORS2 and X-Shooter for GRB 211227A, starting shortly after the X-ray afterglow detection. We performed photometric analysis to look for afterglow and KN emissions associated with the bursts, along with host galaxy imaging and spectroscopy. Optical/NIR results were compared with Swift X-Ray Telescope (XRT) and other high-energy data. Results: For both GRBs we placed deep limits to the optical/NIR afterglow and KN emission. Host galaxies were identified: GRB 211106A at photometric z = 0.64 and GRB 211227A at spectroscopic z = 0.228. Host galaxy properties aligned with typical short GRB hosts. We also compared the properties of the bursts with the S-BAT4 sample to further examined the nature of these events. Conclusions: Study of prompt and afterglow phases, along with host galaxy analysis, confirms GRB 211106A as a short GRB and GRB 211227A as a short GRB with extended emission. The absence of optical/NIR counterparts is likely due to local extinction for GRB 211106A and a faint kilonova for GRB 211227A.Comment: Accepted to A&A on 08 August 2023, 21 pages, 24 figure

Observational study on efficacy of negative expiratory pressure test proposed as screening for obstructive sleep apnea syndrome among commercial interstate bus drivers - protocol study

<p>Abstract</p> <p>Background</p> <p>Obstructive sleep apnea (OSA) is a respiratory disease characterized by the collapse of the extrathoracic airway and has important social implications related to accidents and cardiovascular risk. The main objective of the present study was to investigate whether the drop in expiratory flow and the volume expired in 0.2 s during the application of negative expiratory pressure (NEP) are associated with the presence and severity of OSA in a population of professional interstate bus drivers who travel medium and long distances.</p> <p>Methods/Design</p> <p>An observational, analytic study will be carried out involving adult male subjects of an interstate bus company. Those who agree to participate will undergo a detailed patient history, physical examination involving determination of blood pressure, anthropometric data, circumference measurements (hips, waist and neck), tonsils and Mallampati index. Moreover, specific questionnaires addressing sleep apnea and excessive daytime sleepiness will be administered. Data acquisition will be completely anonymous. Following the medical examination, the participants will perform a spirometry, NEP test and standard overnight polysomnography. The NEP test is performed through the administration of negative pressure at the mouth during expiration. This is a practical test performed while awake and requires little cooperation from the subject. In the absence of expiratory flow limitation, the increase in the pressure gradient between the alveoli and open upper airway caused by NEP results in an increase in expiratory flow.</p> <p>Discussion</p> <p>Despite the abundance of scientific evidence, OSA is still underdiagnosed in the general population. In addition, diagnostic procedures are expensive, and predictive criteria are still unsatisfactory. Because increased upper airway collapsibility is one of the main determinants of OSA, the response to the application of NEP could be a predictor of this disorder. With the enrollment of this study protocol, the expectation is to encounter predictive NEP values for different degrees of OSA in order to contribute toward an early diagnosis of this condition and reduce its impact and complications among commercial interstate bus drivers.</p> <p>Trial registration</p> <p><it>Registro Brasileiro de Ensaios Clinicos </it>(local acronym RBEC) [Internet]: Rio de Janeiro (RJ): <it>Instituto de Informaçao Cientifica e Tecnologica em Saude </it>(Brazil); 2010 - Identifier RBR-7dq5xx. Cross-sectional study on efficacy of negative expiratory pressure test proposed as screening for obstructive sleep apnea syndrome among commercial interstate bus drivers; 2011 May 31 [7 pages]. Available from <url>http://www.ensaiosclinicos.gov.br/rg/RBR-7dq5xx/</url>.</p