Multi-Channel Scheduling for Fast Convergecast in Wireless Sensor Networks

We explore the following fundamental question - how fast can information be collected from a wireless sensor network? We consider a number of design parameters such as, power control, time and frequency scheduling, and routing. There are essentially two factors that hinder efficient data collection - interference and the half-duplex single-transceiver radios. We show that while power control helps in reducing the number of transmission slots to complete a convergecast under a single frequency channel, scheduling transmissions on different frequency channels is more efficient in mitigating the effects of interference (empirically, 6 channels suffice for most 100-node networks). With these observations, we define a receiver-based channel assignment problem, and prove it to be NP-complete on general graphs. We then introduce a greedy channel assignment algorithm that efficiently eliminates interference, and compare its performance with other existing schemes via simulations. Once the interference is completely eliminated, we show that with half-duplex single-transceiver radios the achievable schedule length is lower-bounded by max(2nk − 1,N), where nk is the maximum number of nodes on any subtree and N is the number of nodes in the network. We modify an existing distributed time slot assignment algorithm to achieve this bound when a suitable balanced routing scheme is employed. Through extensive simulations, we demonstrate that convergecast can be completed within up to 50% less time slots, in 100-node networks, using multiple channels as compared to that with single-channel communication. Finally, we also demonstrate further improvements that are possible when the sink is equipped with multiple transceivers or when there are multiple sinks to collect data

Algorithms for Fast Aggregated Convergecast in Sensor Networks

Fast and periodic collection of aggregated data is of considerable interest for mission-critical and continuous monitoring applications in sensor networks. In the many-to-one communication paradigm, referred to as convergecast, we focus on applications wherein data packets are aggregated at each hop en-route to the sink along a tree-based routing topology, and address the problem of minimizing the convergecast schedule length by utilizing multiple frequency channels. The primary hindrance in minimizing the schedule length is the presence of interfering links. We prove that it is NP-complete to determine whether all the interfering links in an arbitrary network can be removed using at most a constant number of frequencies. We give a sufficient condition on the number of frequencies for which all the interfering links can be removed, and propose a polynomial time algorithm that minimizes the schedule length in this case. We also prove that minimizing the schedule length for a given number of frequencies on an arbitrary network is NP-complete, and describe a greedy scheme that gives a constant factor approximation on unit disk graphs. When the routing tree is not given as an input to the problem, we prove that a constant factor approximation is still achievable for degree-bounded trees. Finally, we evaluate our algorithms through simulations and compare their performance under different network parameters

Influence of Bloodmeal Source on Reproductive Output of the Potential West Nile Vector, Culex theileri (Diptera: Culicidae).

Culex theileri Theobald (Diptera: Culicidae) has a wide Afrotropical, southern Palaearctic, northern Oriental, and European distribution. It is mainly considered as a mammophilic mosquito and also feeds on birds and serves as a vector for various zoonotic diseases including West Nile virus. Despite its broad distribution and evidence indicating that Cx. theileri is a competent vector of human and domestic animal pathogens, basic biological and ecological features of this species have not been well investigated. We evaluated the impact of bloodmeal source (human, chicken, cow, and a double bloodmeal such as human and cow or chicken and cow and mixed bloodmeals [cow, chicken, and human] via artificial feeding) on fecundity, hatching rates, developmental times, and viability from egg to adult for laboratory colonized Cx. theileri. Fecundity in mosquitoes that took a chicken bloodmeal, a double bloodmeal and mixed bloodmeals was significantly higher than in females fed on a single cow or single human blood. This is the first study about the bloodmeal sources effect on laboratory-reared Cx. theileri populations and these findings contribute to our understanding of the impact of bloodmeal source on reproduction in Cx. theileri. As it is known that Cx. theileri is a vector for West Nile virus, the potential impacts of bloodmeal source on virus transmission are discussed

A deep learning approach for complex microstructure inference

Automated, reliable, and objective microstructure inference from micrographs is essential for a comprehensive understanding of process-microstructure-property relations and tailored materials development. However, such inference, with the increasing complexity of microstructures, requires advanced segmentation methodologies. While deep learning offers new opportunities, an intuition about the required data quality/quantity and a methodological guideline for microstructure quantification is still missing. This, along with deep learning’s seemingly intransparent decision-making process, hampers its breakthrough in this field. We apply a multidisciplinary deep learning approach, devoting equal attention to specimen preparation and imaging, and train distinct U-Net architectures with 30–50 micrographs of different imaging modalities and electron backscatter diffraction-informed annotations. On the challenging task of lath-bainite segmentation in complex-phase steel, we achieve accuracies of 90% rivaling expert segmentations. Further, we discuss the impact of image context, pre-training with domain-extrinsic data, and data augmentation. Network visualization techniques demonstrate plausible model decisions based on grain boundary morphology

Synthesis and preliminary mechanistic evaluation of 5-(p-tolyl)-1-(quinolin-2-yl)pyrazole-3-carboxylic acid amides with potent antiproliferative activity on human cancer cell lines

We synthesized a series of novel amide derivatives of 5-(p-tolyl)-1-(quinolin-2-yl)pyrazole-3-carboxylic acid and assessed their antiproliferative activities against three human cancer cell lines (Huh7, human liver; MCF7, breast and HCT116, colon carcinoma cell lines) with the sulforhodamine B assay. Compound 4j with 2-chloro-4-pyridinyl group in the amide part exhibited promising cytotoxic activity against all cell lines with IC50values of 1.6 μM, 3.3 μM and 1.1 μM for Huh7, MCF7 and HCT116 cells, respectively, and produced dramatic cell cycle arrest at SubG1/G1 phase as an indicator of apoptotic cell death induction. On the basis of their high potency in cellular environment, these straightforward pyrazole-3-carboxamide derivatives may possess potential in the design of more potent compounds for intervention with cancer cell proliferation. © 2014 Elsevier Masson SAS

Distribution of Spoligotyping Defined Genotypic Lineages among Drug-Resistant Mycobacterium tuberculosis Complex Clinical Isolates in Ankara, Turkey

Background: Investigation of genetic heterogeneity and spoligotype-defined lineages of drug-resistant Mycobacterium tuberculosis clinical isolates collected during a three-year period in two university hospitals and National Tuberculosis Reference and Research Laboratory in Ankara, Turkey. Methods and Findings: A total of 95 drug-resistant M. tuberculosis isolates collected from three different centers were included in this study. Susceptibility testing of the isolates to four major antituberculous drugs was performed using proportion method on Löwenstein–Jensen medium and BACTEC 460-TB system. All clinical isolates were typed by using spoligotyping and IS6110-restriction fragment length polymorphism (RFLP) methods. Seventy-three of the 95 (76.8%) drug resistant M. tuberculosis isolates were isoniazid-resistant, 45 (47.4%) were rifampicin-resistant, 32 (33.7%) were streptomycinresistant and 31 (32.6%) were ethambutol-resistant. The proportion of multidrug-resistant isolates (MDR) was 42.1%. By using spoligotyping, 35 distinct patterns were observed; 75 clinical isolates were grouped in 15 clusters (clustering rate of 79%) and 20 isolates displayed unique patterns. Five of these 20 unique patterns corresponded to orphan patterns in th

Demographic and microbial characteristics of extrapulmonary tuberculosis cases diagnosed in Malatya, Turkey, 2001-2007

<p>Abstract</p> <p>Background</p> <p>Extrapulmonary tuberculosis (EPTB) has an increasing rate in Turkey. The reason remains largely unknown. A better understanding of the demographic and microbial characteristics of EPTB in the Turkish population would extend the knowledgebase of EPTB and allow us to develop better strategies to control tuberculosis (TB).</p> <p><b>Methods</b></p> <p>We retrospectively evaluated clinical and laboratory data of 397 bacteriologically-confirmed TB cases diagnosed during an eight year-period using by chi-square analysis and multivariate logistic regression model.</p> <p>Results</p> <p>Of the 397 study patients, 103 (25.9%) had EPTB and 294 (74.1%) had pulmonary tuberculosis (PTB). The most commonly seen two types of EPTB were genitourinary TB (27.2%) and meningeal TB (19.4%). TB in bone/joints, pleural cavity, lymph nodes, skin, and peritoneal cavity occurred at a frequency ranging from 9.7% to 10.7%. The age distribution was significantly different (P < 0.01) between PTB and EPTB, with patients older than 45 years tending to have an increased risk of EPTB. Furthermore, the distribution of different types of EPTB differed significantly among age groups (P = 0.03). Meningeal and bone and/or joint TB were more commonly observed among the male patients, while lymphatic, genitourinary, and peritoneal TB cases were more frequently seen among females. Unique strain infection was statistically significantly associated with EPTB (OR: 2.82, 95% CI [1.59, 5.00])</p> <p>Conclusions</p> <p>EPTB accounted for a significant proportion of TB cases in Malatya, Turkey between 2001 and 2007. The current study has provided an insight into the dynamics of EPTB in Malatya, Turkey. However, the risk factors for having EPTB in Malatya, Turkey remain to be assessed in future studies using population-based or randomly selected sample.</p

Review of the Palaearctic species of Ismaridae Thomson, 1858 (Hymenoptera: Diaprioidea)

This is an open access article, available to all readers online, published under a Creative Commons BY-NC-ND license: https://creativecommons.org/licenses/by-nc-nd/3.0/. The attached file is the published version of the article

Biallelic variants in ADAMTS15 cause a novel form of distal arthrogryposis

Purpose We aimed to identify the underlying genetic cause for a novel form of distal arthrogryposis. Methods Rare variant family-based genomics, exome sequencing, and disease-specific panel sequencing were used to detect ADAMTS15 variants in affected individuals. Adamts15 expression was analyzed at the single-cell level during murine embryogenesis. Expression patterns were characterized using in situ hybridization and RNAscope. Results We identified homozygous rare variant alleles of ADAMTS15 in 5 affected individuals from 4 unrelated consanguineous families presenting with congenital flexion contractures of the interphalangeal joints and hypoplastic or absent palmar creases. Radiographic investigations showed physiological interphalangeal joint morphology. Additional features included knee, Achilles tendon, and toe contractures, spinal stiffness, scoliosis, and orthodontic abnormalities. Analysis of mouse whole-embryo single-cell sequencing data revealed a tightly regulated Adamts15 expression in the limb mesenchyme between embryonic stages E11.5 and E15.0. A perimuscular and peritendinous expression was evident in in situ hybridization in the developing mouse limb. In accordance, RNAscope analysis detected a significant coexpression with Osr1, but not with markers for skeletal muscle or joint formation. Conclusion In aggregate, our findings provide evidence that rare biallelic recessive trait variants in ADAMTS15 cause a novel autosomal recessive connective tissue disorder, resulting in a distal arthrogryposis syndrome

Combined transcriptomic-(1)H NMR metabonomic study reveals yhat monoethylhexyl phthalate stimulates adipogenesis and glyceroneogenesis in human adipocytes

Adipose tissue is a major storage site for lipophilic environmental contaminants. The environmental metabolic disruptor hypothesis postulates that some pollutants can promote obesity or metabolic disorders by activating nuclear receptors involved in the control of energetic homeostasis. In this context, monoethylhexyl phthalate (MEHP) is of particular concern since it was shown to activate the peroxisome proliferator-activated receptor γ (PPARγ) in 3T3-L1 murine preadipocytes. In the present work, we used an untargeted, combined transcriptomic-(1)H NMR-based metabonomic approach to describe the overall effect of MEHP on primary cultures of human subcutaneous adipocytes differentiated in vitro. MEHP stimulated rapidly and selectively the expression of genes involved in glyceroneogenesis, enhanced the expression of the cytosolic phosphoenolpyruvate carboxykinase, and reduced fatty acid release. These results demonstrate that MEHP increased glyceroneogenesis and fatty acid reesterification in human adipocytes. A longer treatment with MEHP induced the expression of genes involved in triglycerides uptake, synthesis, and storage; decreased intracellular lactate, glutamine, and other amino acids; increased aspartate and NAD, and resulted in a global increase in triglycerides. Altogether, these results indicate that MEHP promoted the differentiation of human preadipocytes to adipocytes. These mechanisms might contribute to the suspected obesogenic effect of MEHP