ACKNOWLEDGMENTS The author would like to convey his appreciation to his supervisory committee

Arroyo) for their support and guidance. Special thanks go to Dr. Crane who gave the author the opportunity to work on the autonomous vehicle project and continually provided important insight and advice. This work would not have been possible without the support of the Air Force Research Laboratory at Tyndall Air Force Base, Florida. Thanks go to Al Neese and the rest of his staff. The author’s work presented in this dissertation focuses on only part of the tasks required for autonomous navigation. Other project members have addressed the remaining tasks. Therefore, thanks go to those who have worked on the autonomous navigation project, both past and present, at the Center for Intelligent Machines and Robotics. Individual thanks go to the project manager, David Armstrong, for his invaluable input, and to office mate David Novick, for his unending programming advice. Finally, special thanks go to the author’s wife, Jennifer Lisa Wit, who provided continuous encouragement and inspiration needed to finish this dissertation. ii

Mortality of treated HIV-1 positive individuals according to viral subtype in Europe and Canada: collaborative cohort analysis

Objectives:To estimate prognosis by viral subtype in HIV-1-infected individuals from start of antiretroviral therapy (ART) and after viral failure.Design:Collaborative analysis of data from eight European and three Canadian cohorts.Methods:Adults (N>20000) who started triple ART between 1996 and 2012 and had data on viral subtype were followed for mortality. We estimated crude and adjusted (for age, sex, regimen, CD4(+) cell count, and AIDS at baseline, period of starting ART, stratified by cohort, region of origin and risk group) mortality hazard ratios (MHR) by subtype. We estimated MHR subsequent to viral failure defined as two HIV-RNA measurements greater than 500 copies/ml after achieving viral suppression.Results:The most prevalent subtypes were B (15419; 74%), C (2091; 10%), CRF02AG (1057; 5%), A (873; 4%), CRF01AE (506; 2.4%), G (359; 1.7%), and D (232; 1.1%). Subtypes were strongly patterned by region of origin and risk group. During 104649 person-years of observation, 1172/20784 patients died. Compared with subtype B, mortality was higher for subtype A, but similar for all other subtypes. MHR for A versus B were 1.13 (95% confidence interval 0.85,1.50) when stratified by cohort, increased to 1.78 (1.27,2.51) on stratification by region and risk, and attenuated to 1.59 (1.14,2.23) on adjustment for covariates. MHR for A versus B was 2.65 (1.64,4.28) and 0.95 (0.57,1.57) for patients who started ART with CD4(+) cell count below, or more than, 100 cells/l, respectively. There was no difference in mortality between subtypes A, B and C after viral failure.Conclusion:Patients with subtype A had worse prognosis, an observation which may be confounded by socio-demographic factors. Copyright (C) 2016 Wolters Kluwer Health, Inc. All rights reserved