The Effect of the Ultrasonic Irrigant Activation Protocol on the Removal of a Dual-species Biofilm from Artificial Lateral Canals

Introduction: Lateral canals are particularly challenging to clean and disinfect. The aim of this study was to compare the removal efficacy of a dual-species biofilm from a lateral canal model by different ultrasonic irrigant activation protocols in vitro. Methods: Artificial root canal models with 270 simulated lateral canals were made of polydimethylsiloxane. A dual-species biofilm (Streptococcus oralis and Actinomyces naeslundi) was grown in vitro in the lateral canals using a constant depth film fermenter. Two percent NaOCl or demineralized water was delivered by a syringe and an open-ended needle for 30 seconds and subsequently activated by an ultrasonic file for a total activation time of 30, 60, or 90 seconds divided in 1 or 3 consecutive activation cycles. In the control groups, the irrigant was allowed to rest for 30, 60, or 90 seconds. The volume of the biofilm in the lateral canal was evaluated before and after the final irrigation protocol by optical coherence tomography. The results were analyzed by 3-way factorial analysis of variance (α = 0.05). Results: Irrigation with NaOCl rather than demineralized water resulted in more effective biofilm removal from the lateral canal (P < .001). Three cycles of intermittent ultrasonic activation were significantly more effective than no activation (P = .029). The total irrigant contact time did not affect biofilm removal (P = .403). Conclusions: The type of the irrigant and the ultrasonic activation protocol affected biofilm removal from artificial lateral canals. None of the compared protocols was able to eradicate the biofilm

The response of dual-species bacterial biofilm to 2% and 5% NaOCl mixed with etidronic acid:A laboratory real-time evaluation using optical coherence tomography

Aim: The addition of etidronic acid (HEDP) to sodium hypochlorite (NaOCl) could increase the antibiofilm potency of the irrigant, whilst maintaining the benefits of continuous chelation. Studies conducted so far have shown that mixing HEDP with NaOCl solutions of relatively low concentration does not compromise the antibiofilm efficacy of the irrigant. However, the working lifespan of NaOCl may decrease resulting in a reduction of its antibiofilm efficacy over time (efficiency). In this regard, continuous irrigant replenishment needs to be examined. This study investigated the response of a dual-species biofilm when challenged with 2% and 5% NaOCl mixed with HEDP for a prolonged timespan and under steady laminar flow. Methodology: Dual-species biofilms comprised of Streptococcus oralis J22 and Actinomyces naeslundii T14V-J1 were grown on human dentine discs in a constant depth film fermenter (CDFF) for 96 h. Biofilms were treated with 2% and 5% NaOCl, alone or mixed with HEDP. Irrigants were applied under steady laminar flow for 8 min. Biofilm response was evaluated by means of optical coherence tomography (OCT). Biofilm removal, biofilm disruption, rate of biofilm loss and disruption as well as bubble formation were assessed. One-way anova, Wilcoxon's signed-rank test and Kruskal–Wallis H test were performed for statistical analysis of the data. The level of significance was set at a ≤.05. Results: Increasing NaOCl concentration resulted in increased biofilm removal and disruption, higher rate of biofilm loss and disruption and increased bubble formation. Mixing HEDP with NaOCl caused a delay in the antibiofilm action of the latter, without compromising its antibiofilm efficacy. Conclusions: NaOCl concentration dictates the biofilm response irrespective of the presence of HEDP. The addition of HEDP resulted in a delay in the antibiofilm action of NaOCl. This delay affects the efficiency, but not the efficacy of the irrigant over time

A high-quality human reference panel reveals the complexity and distribution of genomic structural variants

Structural variation (SV) represents a major source of differences between individual human genomes and has been linked to disease phenotypes. However, the majority of studies provide neither a global view of the full spectrum of these variants nor integrate them into reference panels of genetic variation. Here, we analyse whole genome sequencing data of 769 individuals from 250 Dutch families, and provide a haplotype-resolved map of 1.9 million genome variants across 9 different variant classes, including novel forms of complex indels, and retrotransposition-mediated insertions of mobile elements and processed RNAs. A large proportion are previously under reported variants sized between 21 and 100 bp. We detect 4 megabases of novel sequence, encoding 11 new transcripts. Finally, we show 191 known, trait-associated SNPs to be in strong linkage disequilibrium with SVs and demonstrate that our panel facilitates accurate imputation of SVs in unrelated individuals

The Effect of the Ultrasonic Irrigant Activation Protocol on the Removal of a Dual-species Biofilm from Artificial Lateral Canals

Introduction: Lateral canals are particularly challenging to clean and disinfect. The aim of this study was to compare the removal efficacy of a dual-species biofilm from a lateral canal model by different ultrasonic irrigant activation protocols in vitro. Methods: Artificial root canal models with 270 simulated lateral canals were made of polydimethylsiloxane. A dual-species biofilm (Streptococcus oralis and Actinomyces naeslundi) was grown in vitro in the lateral canals using a constant depth film fermenter. Two percent NaOCl or demineralized water was delivered by a syringe and an open-ended needle for 30 seconds and subsequently activated by an ultrasonic file for a total activation time of 30, 60, or 90 seconds divided in 1 or 3 consecutive activation cycles. In the control groups, the irrigant was allowed to rest for 30, 60, or 90 seconds. The volume of the biofilm in the lateral canal was evaluated before and after the final irrigation protocol by optical coherence tomography. The results were analyzed by 3-way factorial analysis of variance (α = 0.05). Results: Irrigation with NaOCl rather than demineralized water resulted in more effective biofilm removal from the lateral canal (P < .001). Three cycles of intermittent ultrasonic activation were significantly more effective than no activation (P = .029). The total irrigant contact time did not affect biofilm removal (P = .403). Conclusions: The type of the irrigant and the ultrasonic activation protocol affected biofilm removal from artificial lateral canals. None of the compared protocols was able to eradicate the biofilm