Self-assembly in aqueous solutions of a non-ionic hydrotrope

Hydrotropes are amphiphilic molecules, too small to cause spontaneous self-assembly towards equilibrium mesoscale structures in aqueous solutions, but they form dynamic, noncovalent assemblies, which may create microscopic regions of lowered polarity. This enhances the solubilization of hydrophobic compounds, also known as solubilizates, in aqueous solutions and may cause further aggregation to larger structures. In this work, unusual mesoscopic properties of aqueous solutions of a non-ionic hydrotrope, namely tertiary butyl alcohol (TBA) have been investigated by light scattering, microscopy, and chromatography. Aqueous TBA solutions show anomalous thermodynamic and structural properties in the range of concentrations 3-8 mol % TBA and temperatures 0 - 25 °C. These anomalies appear to be associated with short-lived, short-ranged micelle-like structural fluctuations, distinctly different from usual concentration fluctuations in non-ideal solutions. Molecular dynamics simulations and neutron-scattering experiments show clustering of TBA molecules on a nanometer scale, interacting through hydrogen bonds with a shell of water molecules. In this concentration range, TBA aqueous solutions, although macroscopically homogeneous, occasionally show the presence of "mysterious" inhomogeneities on a 100 nm scale. We have found that the emergence of such inhomogeneities strongly correlates with impurities present in commercial TBA samples. Experiments with controlled addition of a third component, such as propylene oxide, isobutyl alcohol, or cyclohexane, reveal the mechanism of formation of these inhomogeneities through stabilization of micelle-like fluctuations by a solubilizate. These structures are long-lived, i.e., stable from a few days up to many months. We have confirmed that mesoscale structures in aqueous solutions can be generated from self-assembly of small molecules, without involvement of surfactants or polymers. This kind of self-assembly may potentially result in the development of novel nanomaterials

PHASE BEHAVIOR AND INTERFACIAL PHENOMENA IN TERNARY SYSTEMS

Phase behavior in multi-component systems has a wide variety of applications in the chemical process industry. In this work, the interfaces in two-phase, three-component systems were modeled and studied. Direct calculations of the asymmetric concentration profiles near the critical points of fluid phase separation are very difficult since they are affected by mesoscopic fluctuations. In this study a "complete scaling" approach was used to model interfacial profiles for a highly asymmetric, dilute ternary mixture near the critical point of liquid-liquid separation. The symmetric order parameter profile, the density profile of the lattice gas model, was used to further calculate the asymmetric interfacial concentration profiles at the mesoscale. Fluid asymmetry has been introduced through mixing of the physical field variables into the symmetric scaling theoretical fields. The system-dependent mixing coefficients were calculated from experimental data and a mean-field equation of state, namely, the Margules model. The resultant interfacial profiles for the concentration of water across the methanol-rich and cyclohexane-rich phases show the asymmetry associated with the contribution of the entropy into the symmetric order parameter profile

p53 Monitors Replication Fork Regression by Binding to “Chickenfoot” Intermediates

The tumor suppressor protein, p53, utilizes multiple mechanisms to ensure faithful transmission of the genome including regulation of DNA replication, repair, and recombination. Monitoring these pathways may involve direct binding of p53 to the DNA intermediates of these processes. In this study, we generated templates resembling stalled replication forks and utilized electron microscopy to examine p53 interactions with these substrates. Our results show that p53 bound with high affinity to the junction of stalled forks, whereas two cancer-derived p53 mutants showed weak binding. Additionally, some of the templates were rearranged to form "chickenfoot" structures in the presence of p53. These were mostly formed due to p53 trapping intermediates of spontaneous fork regression; however, in a small population, the protein appeared to be promoting their formation. Collectively, these results demonstrate the importance of sequence-independent binding in p53-mediated maintenance of genomic integrity

Oocyte quality and ABO blood group system: are they connected?

Background: Blood groups of women have been associated with infertility and other related conditions like diminished ovarian reserve. We have tried to find, if there is any association between blood group of women and the quality of their oocytes.Methods: Present study is a retrospective analysis from the available data of IVF patients on standard ICSI protocols in our tertiary care clinic over 32 months. Oocytes were grouped into GOOD & POOR quality oocytes. Good quality oocytes were further graded into Grade 1, 2, 3. SPSS 15.0 was used for statistical analysis.Results: Good quality oocytes were almost similarly distributed among the blood groups. Among the good quality oocytes, Grade ‘1’ Oocytes were found higher in ‘O’ blood group women.  Conclusions: Blood group alone was found to play no major role in determining the oocyte quality of women

The Epstein-Barr Virus Polymerase Accessory Factor BMRF1 Adopts a Ring-shaped Structure as Visualized by Electron Microscopy

Epstein-Barr virus (EBV) encodes a set of core replication factors used during lytic infection in human cells that parallels the factors used in many other systems. These include a DNA polymerase and its accessory factor, a helicase/primase, and a single strand binding protein. The EBV polymerase accessory factor has been identified as the product of the BMRF1 gene and has been shown by functional assays to increase the activity and processivity of the polymerase. Unlike other members of this class of factors, BMRF1 is also a transcription factor regulating certain EBV genes. Although several polymerase accessory factors, including eukaryotic proliferating cell nuclear antigen, Escherichia coli beta protein, and T4 gene 45 protein have been shown to form oligomeric rings termed sliding clamps, nothing is known about the oligomeric state of BMRF1 or whether it forms a ring. In this work, BMRF1 was purified directly from human cells infected with an adenovirus vector expressing the BMRF1 gene product. The protein was purified to near homogeneity, and examination by negative staining electron microscopy revealed large, flat, ring-shaped molecules with a diameter of 15.5 +/- 0.8 nm and a distinct 5.3-nm diameter hole in the center. The size of these rings is consistent with an oligomer of 6 monomers, nearly twice as large as the trimeric proliferating cell nuclear antigen ring. Unlike the herpes simplex virus UL42 homologue, BMRF1 was found to self-associate in solution. These findings extend the theme of polymerase accessory factors adopting ring-shaped structures and provide an example in which the ring is significantly larger than any previously described sliding clamp

Human Claspin Is a Ring-shaped DNA-binding Protein with High Affinity to Branched DNA Structures

Claspin is an essential protein for the ATR-dependent activation of the DNA replication checkpoint response in Xenopus and human cells. Here we describe the purification and characterization of human Claspin. The protein has a ring-like structure and binds with high affinity to branched DNA molecules. These findings suggest that Claspin may be a component of the replication ensemble and plays a role in the replication checkpoint by directly associating with replication forks and with the various branched DNA structures likely to form at stalled replication forks because of DNA damage