A cross-platform OpenVX library for FPGA accelerators

FPGAs are an excellent platform to implement computer vision applications, since these applications tend to offer a high level of parallelism with many data-independent operations. However, the freedom in the solution design space of FPGAs represents a problem because each solution must be individually designed, verified, and tuned. The emergence of High Level Synthesis (HLS) helps solving this problem and has allowed the implementation of open programming standards as OpenVX for computer vision applications on FPGAs, such as the HiF1ipVX library developed exclusively for Xilinx devices. Although with the HiF1ipVX library, designers can develop solutions efficiently on Xilinx, they do not have an approach to port and run their code on FPGAs from other manufacturers. This work extends the HiFlipVX capabilities in two significant ways: supporting Intel FPGA devices and enabling execution on discrete FPGA accelerators. To provide both without affecting user-facing code, the new carried out implementation combines two HLS programming models: C++, using Intel''s system of tasks, and OpenCL, which provides the CPU interoperability. Comparing with pure OpenCL implementations, this work reduces kernel dispatch resources, saving up to 24% of ALUT resources for each kernel in a graph, and improves performance 2.6 x and energy consumption 1.6 x on average for a set of representative applications, compared with state-of-the-art frameworks

Characterizing of a Mid-Latitude Ice-Rich Landing Site on Mars to Enable in Situ Habitability Studies

We suggest an ice-rich landing site at 188.5E 46.16N within Amazonis Planitia as a candidate location to support a Mars lander mission equipped to study past habitability and regions capable of preserving the physical and chemical signs of life and organic matter. Studies of the ice-rich subsurface on Mars are critical for several reasons. The subsurface environment provides protection from radiation to shield organic and biologic compounds from destruction. The ice-rich substrate is also ideal for preserving organic and biologic molecules and provides a source of H2O for biologic activity. Examination of martian ground ice can test several hypotheses such as: 1) whether ground ice supports habitable conditions, 2) that ground ice can preserve and accumulate organic compounds, and 3) that ice contains biomolecules evident of past or present biological activity on Mars. This Amazonis site, located near the successful Viking Lander 2, shows indirect evidence of subsurface ice (ubiquitous defined polygonal ground, gamma ray spectrometer hydrogen signature, and numerical modeling of ice stability) and direct evidence of exposed subsurface ice. This site also provides surface conditions favorable to a safe landing including no boulders, low rock density, minimal rough topography, and few craters

Transcriptome analysis of Taenia solium cysticerci using Open reading Frame ESTS (ORESTES)

<p>Abstract</p> <p>Background</p> <p>Human infection by the pork tapeworm <it>Taenia solium </it>affects more than 50 million people worldwide, particularly in underdeveloped and developing countries. Cysticercosis which arises from larval encystation can be life threatening and difficult to treat. Here, we investigate for the first time the transcriptome of the clinically relevant cysticerci larval form.</p> <p>Results</p> <p>Using Expressed Sequence Tags (ESTs) produced by the ORESTES method, a total of 1,520 high quality ESTs were generated from 20 ORESTES cDNA mini-libraries and its analysis revealed fragments of genes with promising applications including 51 ESTs matching antigens previously described in other species, as well as 113 sequences representing proteins with potential extracellular localization, with obvious applications for immune-diagnosis or vaccine development.</p> <p>Conclusion</p> <p>The set of sequences described here will contribute to deciphering the expression profile of this important parasite and will be informative for the genome assembly and annotation, as well as for studies of intra- and inter-specific sequence variability. Genes of interest for developing new diagnostic and therapeutic tools are described and discussed.</p

Crater Morphology in the Phoenix Landing Ellipse: Insights Into Net Erosion and Ice Table Depth

Icebreaker [1] is a Discovery class mission being developed for future flight opportunities. Under this mission concept, the Icebreaker payload is carried on a stationary lander, and lands in the same landing ellipse as Phoenix. Samples are acquired from the subsurface using a drilling system that penetrates into materials which may include loose or cemented soil, icy soil, pure ice, rocks, or mixtures of these. To avoid the complexity of mating additional strings, the drill is single-string, limiting it to a total length of 1 m

NaI(Tl) Scintillator's Response Functions for Point-like and Distributed Gamma-ray Sources

The response functions of a NaI(Tl) detectors have been estimated using Monte Carlo methods. Response functions were calculated for monoenergetic photon sources (0.05 to 3 MeV). Responses were calculated for point-like sources and for sources distributed in Portland cement cylinders. Calculated responses were used to estimate the detector efficiency for point-like and distributed sources. Samples of cylindrical Portland cement were prepared and exposed to the photoneutron field produced by a 15 MV linac used for radiotherapy. Short half-life radioisotopes were induced and the activity was determined by measuring the pulse-height spectra with a NaI(Tl) g-ray spectrometer that was calibrated using point-like sources. Instead of doing corrections due to differences between the geometry, material and solid angle of point-like sources used for calibration, and the Portland cement cylinders, the detection efficiency was determined using the ratio between the efficiencies for the point-like and the distributed sources estimated with the Monte Carlo calculations, and the activity of the induced isotopes in cement was obtained

Structure and Magnetism of well-defined cobalt nanoparticles embedded in a niobium matrix

Our recent studies on Co-clusters embedded in various matrices reveal that the co-deposition technique (simultaneous deposition of two beams : one for the pre-formed clusters and one for the matrix atoms) is a powerful tool to prepare magnetic nanostructures with any couple of materials even though they are miscible. We study, both sharply related, structure and magnetism of the Co/Nb system. Because such a heterogeneous system needs to be described at different scales, we used microscopic and macroscopic techniques but also local selective absorption ones. We conclude that our clusters are 3 nm diameter f.c.c truncated octahedrons with a pure cobalt core and a solid solution between Co and Nb located at the interface which could be responsible for the magnetically inactive monolayers we found. The use of a very diluted Co/Nb film, further lithographed, would allow us to achieve a pattern of microsquid devices in view to study the magnetic dynamics of a single-Co cluster.Comment: 7 TeX pages, 9 Postscript figures, detailed heading adde

A Smartphone-Based Tool for Rapid, Portable, and Automated Wide-Field Retinal Imaging.

Purpose:High-quality, wide-field retinal imaging is a valuable method for screening preventable, vision-threatening diseases of the retina. Smartphone-based retinal cameras hold promise for increasing access to retinal imaging, but variable image quality and restricted field of view can limit their utility. We developed and clinically tested a smartphone-based system that addresses these challenges with automation-assisted imaging. Methods:The system was designed to improve smartphone retinal imaging by combining automated fixation guidance, photomontage, and multicolored illumination with optimized optics, user-tested ergonomics, and touch-screen interface. System performance was evaluated from images of ophthalmic patients taken by nonophthalmic personnel. Two masked ophthalmologists evaluated images for abnormalities and disease severity. Results:The system automatically generated 100° retinal photomontages from five overlapping images in under 1 minute at full resolution (52.3 pixels per retinal degree) fully on-phone, revealing numerous retinal abnormalities. Feasibility of the system for diabetic retinopathy (DR) screening using the retinal photomontages was performed in 71 diabetics by masked graders. DR grade matched perfectly with dilated clinical examination in 55.1% of eyes and within 1 severity level for 85.2% of eyes. For referral-warranted DR, average sensitivity was 93.3% and specificity 56.8%. Conclusions:Automation-assisted imaging produced high-quality, wide-field retinal images that demonstrate the potential of smartphone-based retinal cameras to be used for retinal disease screening. Translational Relevance:Enhancement of smartphone-based retinal imaging through automation and software intelligence holds great promise for increasing the accessibility of retinal screening