Skyrme-force time-dependent Hartree-Fock calculations with axial symmetry

We discuss axially symmetric time-dependent Hartree-Fock calculations using a finite-range modification of the Skyrme energy functional. The finite-difference forms of the coordinate-space time-dependent Hartree-Fock equations, the method of time evolution, and other numerical aspects are presented. Detailed results for (^84)Kr-induced deep-inelastic collisions with (^208)Pb at E_(lab) = 494 MeV and with (^209)Bi at E_(lab) = 600 MeV and 714 MeV are compared with experiment. [NUCLEAR REACTIONS (^84)Kr + (^208)Pb at E_lab = 494 MeV and (^84)Kr + (^209)Bi at E_1ab=600 and 714 MeV, in the time-dependent Hartree-Fock approximation. Strongy damped collisions. Details of Skyrme force calculations with axial symmetry.

Predicting the outer membrane proteome of Pasteurella multocida based on consensus prediction enhanced by results integration and manual confirmation

Background Outer membrane proteins (OMPs) of Pasteurella multocida have various functions related to virulence and pathogenesis and represent important targets for vaccine development. Various bioinformatic algorithms can predict outer membrane localization and discriminate OMPs by structure or function. The designation of a confident prediction framework by integrating different predictors followed by consensus prediction, results integration and manual confirmation will improve the prediction of the outer membrane proteome. Results In the present study, we used 10 different predictors classified into three groups (subcellular localization, transmembrane β-barrel protein and lipoprotein predictors) to identify putative OMPs from two available P. multocida genomes: those of avian strain Pm70 and porcine non-toxigenic strain 3480. Predicted proteins in each group were filtered by optimized criteria for consensus prediction: at least two positive predictions for the subcellular localization predictors, three for the transmembrane β-barrel protein predictors and one for the lipoprotein predictors. The consensus predicted proteins were integrated from each group into a single list of proteins. We further incorporated a manual confirmation step including a public database search against PubMed and sequence analyses, e.g. sequence and structural homology, conserved motifs/domains, functional prediction, and protein-protein interactions to enhance the confidence of prediction. As a result, we were able to confidently predict 98 putative OMPs from the avian strain genome and 107 OMPs from the porcine strain genome with 83% overlap between the two genomes. Conclusions The bioinformatic framework developed in this study has increased the number of putative OMPs identified in P. multocida and allowed these OMPs to be identified with a higher degree of confidence. Our approach can be applied to investigate the outer membrane proteomes of other Gram-negative bacteria

Are There Magnetars in High Mass X-ray Binaries? The Case of SuperGiant Fast X-Ray Transients

In this paper we survey the theory of wind accretion in high mass X-ray binaries hosting a magnetic neutron star and a supergiant companion. We concentrate on the different types of interaction between the inflowing wind matter and the neutron star magnetosphere that are relevant when accretion of matter onto the neutron star surface is largely inhibited; these include the inhibition through the centrifugal and magnetic barriers. Expanding on earlier work, we calculate the expected luminosity for each regime and derive the conditions under which transition from one regime to another can take place. We show that very large luminosity swings (~10^4 or more on time scales as short as hours) can result from transitions across different regimes. The activity displayed by supergiant fast X-ray transients, a recently discovered class of high mass X-ray binaries in our galaxy, has often been interpreted in terms of direct accretion onto a neutron star immersed in an extremely clumpy stellar wind. We show here that the transitions across the magnetic and/or centrifugal barriers can explain the variability properties of these sources as a results of relatively modest variations in the stellar wind velocity and/or density. According to this interpretation we expect that supergiant fast X-ray transients which display very large luminosity swings and host a slowly spinning neutron star are characterized by magnetar-like fields, irrespective of whether the magnetic or the centrifugal barrier applies. Supergiant fast X-ray transients might thus provide a new opportunity to detect and study magnetars in binary systems.Comment: Accepted for publication in ApJ. 16 pages, 6 figure

Microscopic sub-barrier fusion calculations for the neutron star crust

Fusion of very neutron rich nuclei may be important to determine the composition and heating of the crust of accreting neutron stars. Fusion cross sections are calculated using time-dependent Hartree-Fock theory coupled with density-constrained Hartree-Fock calculations to deduce an effective potential. Systems studied include 16O+16O, 16O+24O, 24O+24O, 12C+16O, and 12C+24O. We find remarkable agreement with experimental cross sections for the fusion of stable nuclei. Our simulations use the SLy4 Skyrme force that has been previously fit to the properties of stable nuclei, and no parameters have been fit to fusion data. We compare our results to the simple S\~{a}o Paulo static barrier penetration model. For the asymmetric systems 12C+24O or 16O+24O we predict an order of magnitude larger cross section than those predicted by the S\~{a}o Paulo model. This is likely due to the transfer of neutrons from the very neutron rich nucleus to the stable nucleus and dynamical rearrangements of the nuclear densities during the collision process. These effects are not included in potential models. This enhancement of fusion cross sections, for very neutron rich nuclei, can be tested in the laboratory with radioactive beams.Comment: 9 pages, 11 figures, corrected small errors in Figs 10, 11, Phys. Rev. C in pres

Heavy meson masses and decay constants from relativistic heavy quarks in full lattice QCD

We determine masses and decay constants of heavy-heavy and heavy-charm pseudoscalar mesons as a function of heavy quark mass using a fully relativistic formalism known as Highly Improved Staggered Quarks for the heavy quark. We are able to cover the region from the charm quark mass to the bottom quark mass using MILC ensembles with lattice spacing values from 0.15 fm down to 0.044 fm. We obtain f_{B_c} = 0.427(6) GeV; m_{B_c} = 6.285(10) GeV and f_{\eta_b} = 0.667(6) GeV. Our value for f_{\eta_b} is within a few percent of f_{\Upsilon} confirming that spin effects are surprisingly small for heavyonium decay constants. Our value for f_{B_c} is significantly lower than potential model values being used to estimate production rates at the LHC. We discuss the changing physical heavy-quark mass dependence of decay constants from heavy-heavy through heavy-charm to heavy-strange mesons. A comparison between the three different systems confirms that the B_c system behaves in some ways more like a heavy-light system than a heavy-heavy one. Finally we summarise current results on decay constants of gold-plated mesons.Comment: 16 pages, 12 figure