Texture-based crowd detection and localisation

This paper presents a crowd detection system based on texture analysis. The state-of-the-art techniques based on co-occurrence matrix have been revisited and a novel set of features proposed. These features provide a richer description of the co-occurrence matrix, and can be exploited to obtain stronger classification results, especially when smaller portions of the image are considered. This is extremely useful for crowd localisation: acquired images are divided into smaller regions in order to perform a classification on each one. A thorough evaluation of the proposed system on a real world data set is also presented: this validates the improvements in reliability of the crowd detection and localisation

Evidence for suboxic nitrification in recent marine sediments

The classical scheme of biogeochemical zones (BGZ) is known to be an oversimplification of the microbial processes that occur in organic-rich marine sediments. Results from a coupled deployment of pore-water gel probes in Loch Duich, Scotland, provide direct evidence for rapid recycling within the iron reduction (FeR) and sulphate reduction (SR) zones. High resolution porewater profiles obtained using diffusive equilibrium in thin films (DET) gel probes found a nitrate peak at the boundary between the FeR and SR zones. This non-steady state feature is consistent with recycling of reduced N occurring throughout the FeR zone. Both conventional pore-water iron profiles and results from diffusive gradient in thin films (DGT) probes indicate that iron is solubilised and precipitated in rapid Fe/S recycling reactions throughout the SR zone. The presence of such complex recycling reactions confirms the oversimplification of the classical BGZ scheme

Ostracods from freshwater and brackish environments of the Carboniferous of the Midland Valley of Scotland : the early colonization of terrestrial water bodies

The Mississippian Strathclyde Group of the Midland Valley of Scotland yields some of the earliest non-marine ostracods. The succession records shallow marine, deltaic, estuarine, lagoonal, lacustrine, fluvial and swamp environments representing a series of staging-posts between fully marine and limnetic settings. Macrofossils and ostracods are assigned to marine, marginal marine, brackish and freshwater environments based on their faunal assemblage patterns. Key brackish to freshwater ostracods are Geisina arcuata, Paraparchites circularis n. sp., Shemonaella ornata n. sp. and Silenites sp. A, associated with the bivalves Anthraconaia, Carbonicola, Cardiopteridium, Curvirimula, Naiadites, the microconchid ‘Spirorbis’, Spinicaudata and fish. Many Platycopina and Paraparchiticopina ostracods are interpreted as euryhaline, which corresponds with their occurrence in marine to coastal plain water bodies, and supports the ‘estuary effect’ hypothesis of non-marine colonization. The success of non-marine colonization by ostracods was dependent on the intrinsic adaptations of ostracod species to lower salinities, such as new reproductive strategies and the timing of extrinsic mechanisms to drive non-marine colonization, such as sea-level change. The genus Carbonita is the oldest and most common freshwater ostracod, and went on to dominate freshwater environments in the Late Palaeozoic

Anoxic nitrification in marine sediments

Nitrate peaks are found in pore-water profiles in marine sediments at depths considerably below the conventional zone of oxic nitrification. These have been interpreted to represent nonsteady- state effects produced by the activity of nitrifying bacteria, and suggest that nitrification occurs throughout the anoxic sediment region. In this study, ΣNO3 peaks and molecular analysis of DNA and RNA extracted from anoxic sediments of Loch Duich, an organic-rich marine fjord, are consistent with nitrification occurring in the anoxic zone. Analysis of ammonia oxidiser 16S rRNA gene fragments amplified from sediment DNA indicated the abundance of autotrophic ammonia-oxidising bacteria throughout the sediment depth sampled (40 cm), while RT-PCR analysis indicated their potential activity throughout this region. A large non-steady-state pore-water ΣNO3 peak at ~21 cm correlated with discontinuities in this ammonia-oxidiser community. In addition, a subsurface nitrate peak at ~8 cm below the oxygen penetration depth, correlated with the depth of a peak in nitrification rate, assessed by transformation of 15N-labelled ammonia. The source of the oxidant required to support nitrification within the anoxic region is uncertain. It is suggested that rapid recycling of N is occurring, based on a coupled reaction involving Mn oxides (or possibly highly labile Fe oxides) buried during small-scale slumping events. However, to fully investigate this coupling, advances in the capability of high-resolution pore-water techniques are required

Structure Functions are not Parton Probabilities

The common view that structure functions measured in deep inelastic lepton scattering are determined by the probability of finding quarks and gluons in the target is not correct in gauge theory. We show that gluon exchange between the fast, outgoing partons and target spectators, which is usually assumed to be an irrelevant gauge artifact, affects the leading twist structure functions in a profound way. This observation removes the apparent contradiction between the projectile (eikonal) and target (parton model) views of diffractive and small x_{Bjorken} phenomena. The diffractive scattering of the fast outgoing quarks on spectators in the target causes shadowing in the DIS cross section. Thus the depletion of the nuclear structure functions is not intrinsic to the wave function of the nucleus, but is a coherent effect arising from the destructive interference of diffractive channels induced by final state interactions. This is consistent with the Glauber-Gribov interpretation of shadowing as a rescattering effect.Comment: 35 pages, 8 figures. Discussion of physical consequences of final state interactions amplified. Material on light-cone gauge choices adde

Involution of the mouse mammary gland is associated with an immune cascade and an acute-phase response, involving LBP, CD14 and STAT3

INTRODUCTION: Involution of the mammary gland is a complex process of controlled apoptosis and tissue remodelling. The aim of the project was to identify genes that are specifically involved in this process. METHODS: We used Affymetrix oligonucleotide microarrays to perform a detailed transcript analysis on the mechanism of controlled involution after withdrawal of the pups at day seven of lactation. Some of the results were confirmed by semi-quantitative reverse transcriptase polymerase chain reaction, Western blotting or immunohistochemistry. RESULTS: We identified 145 genes that were specifically upregulated during the first 4 days of involution; of these, 49 encoded immunoglobulin genes. A further 12 genes, including those encoding the signal transducer and activator of transcription 3 (STAT3), the lipopolysaccharide receptor (CD14) and lipopolysaccharide-binding protein (LBP), were involved in the acute-phase response, demonstrating that the expression of acute-phase response genes can occur in the mammary gland itself and not only in the liver. Expression of LBP and CD14 was upregulated, at both the RNA and protein level, immediately after pup withdrawal; CD14 was strongly expressed in the luminal epithelial cells. Other genes identified suggested neutrophil activation early in involution, followed by macrophage activation late in the process. Immunohistochemistry and histological staining confirmed the infiltration of the involuting mammary tissue with neutrophils, plasma cells, macrophages and eosinophils. CONCLUSION: Oligonucleotide microarrays are a useful tool for identifying genes that are involved in the complex developmental process of mammary gland involution. The genes identified are consistent with an immune cascade, with an early acute-phase response that occurs in the mammary gland itself and resembles a wound healing process

The potential of a solid-state fermentation supplement to augment white lupin (Lupinus albus) meal incorporation in diets for farmed common carp (Cyprinus carpio)

A 10-week feeding trial was conducted to evaluate the effects of partially substituting soya protein concentrate (SPC), with white lupin (Lupinus albus) meal in carp (Cyprinus carpio) diets. This study further investigated the dietary inclusion of a solid-state fermentation (SSF) product of Aspergillus niger in tandem with SPC replacement. Six experimental diets were produced to be isonitrogenous (42%), isolipdic (8%) and isoenergetic (19 MJ kg−1). Four diets were formulated to have 12.5 and 25% substitution of SPC using lupin meal, and with and without a supplement of 0.1% of SSF. An additional two diets were designed to serve as a basal reference with no SPC replacement, but one supplemented with 0.1% SSF inclusion. The results of this study showed that SPC can be replaced with up to 25% white lupin meal in carp diets, without reduction of growth performance, feed utilisation, body composition, gut integrity or health. The addition of SSF to the test diets enhanced growth performance (specific growth rate, P < 0.05) and nutrient utilisation (e.g. feed conversion ratio and protein efficiency ratio, P < 0.05)

On the Role of Density Matrices in Bohmian Mechanics

It is well known that density matrices can be used in quantum mechanics to represent the information available to an observer about either a system with a random wave function (``statistical mixture'') or a system that is entangled with another system (``reduced density matrix''). We point out another role, previously unnoticed in the literature, that a density matrix can play: it can be the ``conditional density matrix,'' conditional on the configuration of the environment. A precise definition can be given in the context of Bohmian mechanics, whereas orthodox quantum mechanics is too vague to allow a sharp definition, except perhaps in special cases. In contrast to statistical and reduced density matrices, forming the conditional density matrix involves no averaging. In Bohmian mechanics with spin, the conditional density matrix replaces the notion of conditional wave function, as the object with the same dynamical significance as the wave function of a Bohmian system.Comment: 16 pages LaTeX, no figure

Combined effects of exogenous enzymes and probiotic on Nile tilapia (Oreochromis niloticus) growth, intestinal morphology and microbiome

A study was carried out to investigate the combined effect of exogenous enzymes and probiotic supplementation on tilapia growth, intestinal morphology and microbiome composition. Tilapia (34.56 ± 0.05 g) were fed one of four diets (35% protein, 5% lipid); one of which was a control and the remaining three diets were supplemented with either enzymes (containing phytase, protease and xylanase), probiotic (containing Bacillus subtilis, Bacillus licheniformis and Bacillus pumilus) or enz-pro (the combination of the enzymes and probiotic). Tilapia fed diet supplemented with enz-pro performed better (P < 0.05) than tilapia fed the control and probiotic supplemented diets in terms of final body weight (FBW), specific growth rate (SGR), feed conversion ratio (FCR) and protein efficiency ratio (PER). The dietary treatments did not affect somatic indices. The serum lysozyme activity was significantly higher (P < 0.05) in tilapia fed the probiotic supplemented diet than of those fed the remaining experimental diets. The intestinal perimeter ratio was higher (P < 0.05) in tilapia fed enz-pro supplemented diet when compared to those fed with the control and probiotic supplemented diets. Goblet cells abundance, microvilli diameter and total enterocyte absorptive surface was higher (P < 0.05) in tilapia fed diet supplemented with enz-pro than those fed the control diet. High-throughput sequencing revealed that majority of reads derived from the tilapia digesta belonged to members of Fusobacteria (predominantly Cetobacterium) distantly followed by Proteobacteria and Firmicutes. The alpha and beta diversities did not differ among dietary treatments indicating that the overall microbial community was not modified to a large extent by dietary treatment. In conclusion, supplementation of the diet with a combination of enzymes and probiotic is capable of improving tilapia growth and intestinal morphology without deleterious effect on the intestinal microbial composition