Ages of the Pliocene-Pleistocene Alexandra and Ngatutura Volcanics, western North Island, New Zealand, and some geological implications

The Alexandra and Ngatutura Volcanics are the two southernmost of the Pliocene-Quaternary volcanic fields of western and northern North Island, New Zealand, northwest of Taupo Volcanic Zone TVZ. The Ngatutura Basalts are an alkalic basaltic field comprising monogenetic volcanoes. The Alexandra Volcanics consist of three basaltic magma series: an alkalic (Okete Volcanics), calcalkalic (Karioi, Pirongia, Kakepuku, and Te Kawa Volcanics), and a minor potassic series. Twenty new K-Arages are presented for the Alexandra Volcanics and 9 new ages for the Ngatutura Basalts. Ages of the Alexandra Volcanics range from 2.74 to 1 .60 Ma, and the ages of all three magma series overlap. Ages of the Ngatutura Basalts range from 1 .83 to 1.54 Ma. Each basaltic field has a restricted time range and there is a progressive younging in age of the basaltic fields of western North Island from the Alexandra Volcanics in the south, to Ngatutura, to South Auckland, and then to the Auckland field in the north. Neither of the Alexandra nor Ngatutura Volcanics shows any younging direction of their volcanic centres or any age pattern within their fields, and there is no systematic variation in age with rock composition. Any correlation of age with degree of erosion of volcanic cones is invalid for these basaltic fields; instead, the degree of erosion may be controlled by the lithology of the cones and possibly by the extent of preservation offered by the thick cover deposits of the Kauroa, Hamilton, and younger tephra beds. Stratigraphic relations have enabled the earliest member of the Kauroa Ash Formation to be dated at 2.3 Ma. This formation represents a series of widespread rhyolitic plinian and ignimbrite eruptions probably derived from TVZ and initiated during the Late Pliocene

Management of the neck in differentiated thyroid cancer

Differentiated thyroid cancer is characterized by an excellent long-term prognosis, which unlike other head and neck carcinomas, is not influenced definitively by regional lymph node metastasis. The relative rarity of the disease, together with its tendency for delayed metastasis and its low mortality, makes a prospective randomized trial comparing treatment outcomes difficult. As a result, the effect of cervical lymph node metastases on survival is unclear, making meaningful recommendations for their management somewhat subjective. This article discusses guidelines for the management of the neck in differentiated

A systematic review of treating recurrent head and neck cancer: a reintroduction of brachytherapy with or without surgery.

Purpose: To review brachytherapy use in recurrent head and neck carcinoma (RHNC) with focus on its efficacy and complication rates. Material and methods: A literature search of PubMed, Ovid, Google Scholar, and Scopus was conducted from 1990 to 2017. Publications describing treatment of RHNC with brachytherapy with or without surgery were included. The focus of this review is on oncologic outcomes and the safety of brachytherapy in the recurrent setting. Results: Thirty studies involving RHNC treatment with brachytherapy were reviewed. Brachytherapy as adjunctive treatment to surgical resection appears to be associated with an improved local regional control and overall survival, when compared with the published rates for re-irradiation utilizing external beam radiotherapy (RT) or brachytherapy alone. Safety data remains variable with different isotopes and dose rates with implantable brachytherapy demonstrating a tolerable side effect profile. Conclusions: Although surgery remains a mainstay treatment for RHNC, intraoperative interstitial brachytherapy delivery as adjunctive therapy may improve the treatment outcome and may be associated with fewer complication rates as compared to reirradiation using external beam radiotherapy. Further investigations are required to elucidate the role of brachytherapy for RHNC

Identification of structural variation in mouse genomes.

Structural variation is variation in structure of DNA regions affecting DNA sequence length and/or orientation. It generally includes deletions, insertions, copy-number gains, inversions, and transposable elements. Traditionally, the identification of structural variation in genomes has been challenging. However, with the recent advances in high-throughput DNA sequencing and paired-end mapping (PEM) methods, the ability to identify structural variation and their respective association to human diseases has improved considerably. In this review, we describe our current knowledge of structural variation in the mouse, one of the prime model systems for studying human diseases and mammalian biology. We further present the evolutionary implications of structural variation on transposable elements. We conclude with future directions on the study of structural variation in mouse genomes that will increase our understanding of molecular architecture and functional consequences of structural variation

Coronary lumen at six-month follow-up of a new radiopaque Cordis tantalum stent using quantitative angiography and intracoronary ultrasound.

To determine the reliability of geometric (edge-detection) quantitative coronary angiographic analysis (QCA) of restenosis within a new Cordis tantalum stent, QCA and intracoronary ultrasound (ICUS) measurements were compared in both an experimental restenosis model and in the clinical follow-up of patients. In the experimental series, Plexiglas phantom vessels with concentric stenosis channels ranging from 0.75 to 3.0 mm in diameter and with a reference diameter of 3.0 mm were imaged both before and after their insertion in tantalum stents. In the clinical series, the agreement of QCA and ICUS measurements were studied in 23 patients who had undergone coronary implantation of the new tantalum stent and in 23 patients who had undergone balloon angioplasty 6 months previously. The reliability of QCA declined in the presence of the radiopaque stent (accuracy of QCA decreased from -0.07 to -0.12 mm), whereas the reliability of lumen measurements by ICUS was independent of the presence of the radiopaque stent (-0.12 and -0.13 mm). Without the stent, the average minimal luminal diameter (MLD) obtained by QCA of the 1.00 mm Plexiglas vessel was 1.00 +/- 0.01 mm, and the 3.00 mm reference vessel diameter was 2.81 +/- 0.05 mm, providing a 64 +/- 1% diameter stenosis. After introduction of the stent, the average MLD and reference vessel diameter were 0.99 +/- 0.06 and 3.36 +/- 0.17 mm, respectively, providing a diameter stenosis of 71 +/- 2%. ICUS measurements (2.77 mm) of the reference vessel diameter (3.00 mm) were unaffected by the presence of the stent. (ABSTRACT TRUNCATED AT 250 WORDS

‘Eastern African paradox’ rainfall decline due to shorter not less intense long rains

An observed decline in the Eastern African Long Rains from the 1980s to late 2000s appears contrary to the projected increase under future climate change. This “Eastern African climate paradox” confounds use of climate projections for adaptation planning across Eastern Africa. Here we show the decline corresponds to a later onset and earlier cessation of the long rains, with a similar seasonal maximum in area-averaged daily rainfall. Previous studies have explored the role of remote teleconnections, but those mechanisms do not sufficiently explain the decline or the newly identified change in seasonality. Using a large ensemble of observations, reanalyses and atmospheric simulations, we propose a regional mechanism that explains both the observed decline and the recent partial recovery. A decrease in surface pressure over Arabia and warmer north Arabian Sea is associated with enhanced southerlies and an earlier cessation of the long rains. This is supported by a similar signal in surface pressure in many atmosphere-only models giving lower May rainfall and an earlier cessation. Anomalously warm seas south of Eastern Africa delay the northward movement of the tropical rain-band, giving a later onset. These results are key in understanding the paradox. It is now a priority to establish the balance of mechanisms that have led to these trends, which are partially captured in atmosphere-only simulations

Generic Continuous Spectrum for Ergodic Schr"odinger Operators

We consider discrete Schr"odinger operators on the line with potentials generated by a minimal homeomorphism on a compact metric space and a continuous sampling function. We introduce the concepts of topological and metric repetition property. Assuming that the underlying dynamical system satisfies one of these repetition properties, we show using Gordon's Lemma that for a generic continuous sampling function, the associated Schr"odinger operators have no eigenvalues in a topological or metric sense, respectively. We present a number of applications, particularly to shifts and skew-shifts on the torus.Comment: 14 page

Gene expression profiling of Naïve sheep genetically resistant and susceptible to gastrointestinal nematodes

BACKGROUND: Gastrointestinal nematodes constitute a major cause of morbidity and mortality in grazing ruminants. Individual animals or breeds, however, are known to differ in their resistance to infection. Gene expression profiling allows us to examine large numbers of transcripts simultaneously in order to identify those transcripts that contribute to an animal's susceptibility or resistance. RESULTS: With the goal of identifying genes with a differential pattern of expression between sheep genetically resistant and susceptible to gastrointestinal nematodes, a 20,000 spot ovine cDNA microarray was constructed. This array was used to interrogate the expression of 9,238 known genes in duodenum tissue of four resistant and four susceptible female lambs. Naïve animals were used in order to look at genes that were differentially expressed in the absence of infection with gastrointestinal nematodes. Forty one unique known genes were identified that were differentially expressed between the resistant and susceptible animals. Northern blotting of a selection of the genes confirmed differential expression. The differentially expressed genes had a variety of functions, although many genes relating to the stress response and response to stimulus were more highly expressed in the susceptible animals. CONCLUSION: We have constructed the first reported ovine microarray and used this array to examine gene expression in lambs genetically resistant and susceptible to gastrointestinal nematode infection. This study indicates that susceptible animals appear to be generating a hyper-sensitive immune response to non-nematode challenges. The gastrointestinal tract of susceptible animals is therefore under stress and compromised even in the absence of gastrointestinal nematodes. These factors may contribute to the genetic susceptibility of these animals