NEAMS Software Licensing, Release, and Distribution: Implications for FY2013 Work Package Planning

The vision of the NEAMS program is to bring truly predictive modeling and simulation (M&S) capabilities to the nuclear engineering community in order to enable a new approach to the analysis of nuclear systems. NEAMS anticipates issuing in FY 2018 a full release of its computational 'Fermi Toolkit' aimed at advanced reactor and fuel cycles. The NEAMS toolkit involves extensive software development activities, some of which have already been underway for several years, however, the Advanced Modeling and Simulation Office (AMSO), which sponsors the NEAMS program, has not yet issued any official guidance regarding software licensing, release, and distribution policies. This motivated an FY12 task in the Capability Transfer work package to develop and recommend an appropriate set of policies. The current preliminary report is intended to provide awareness of issues with implications for work package planning for FY13. We anticipate a small amount of effort associated with putting into place formal licenses and contributor agreements for NEAMS software which doesn't already have them. We do not anticipate any additional effort or costs associated with software release procedures or schedules beyond those dictated by the quality expectations for the software. The largest potential costs we anticipate would be associated with the setup and maintenance of shared code repositories for development and early access to NEAMS software products. We also anticipate an opportunity, with modest associated costs, to work with the Radiation Safety Information Computational Center (RSICC) to clarify export control assessment policies for software under development

A Roadmap for NEAMS Capability Transfer

The vision of the Nuclear Energy Advanced Modeling and Simulation (NEAMS) program is to bring truly predictive modeling and simulation (M&S) capabilities to the nuclear engineering community in order to enable a new approach to the design and analysis of nuclear energy systems. From its inception, the NEAMS program has always envisioned a broad user base for its software and scientific products, including researchers within the DOE complex, nuclear industry technology developers and vendors, and operators. However activities to date have focused almost exclusively on interactions with NEAMS sponsors, who are also near-term users of NEAMS technologies. The task of the NEAMS Capability Transfer (CT) program element for FY2011 is to develop a comprehensive plan to support the program's needs for user outreach and technology transfer. In order to obtain community input to this plan, a 'NEAMS Capability Transfer Roadmapping Workshop' was held 4-5 April 2011 in Chattanooga, TN, and is summarized in this report. The 30 workshop participants represented the NEAMS program, the DOE and industrial user communities, and several outside programs. The workshop included a series of presentations providing an overview of the NEAMS program and presentations on the user outreach and technology transfer experiences of (1) The Advanced Simulation and Computing (ASC) program, (2) The Standardized Computer Analysis for Licensing Evaluation (SCALE) project, and (3) The Consortium for Advanced Simulation of Light Water Reactors (CASL), followed by discussion sessions. Based on the workshop and other discussions throughout the year, we make a number of recommendations of key areas for the NEAMS program to develop the user outreach and technology transfer activities: (1) Engage not only DOE, but also industrial users sooner and more often; (2) Engage with the Nuclear Regulatory Commission to facilitate their understanding and acceptance of NEAMS approach to predictive M&S; (3) Place requirements gathering from prospective users on a more formal footing, updating requirements on a regular basis and incorporate them into planning and execution of the project in a traceable fashion; (4) Seek out the best available data for validation purposes, and work with experimental programs to design and carry out new experiments that satisfy the need for data suitable for validation of high-fidelity M&S codes; (5) Develop and implement program-wide plans and policies for export control, licensing, and distribution of NEAMS software products; (6) Establish a program of sponsored alpha testing by experienced users in order to obtain feedback on NEAMS codes; (7) Provide technical support for NEAMS software products; (8) Develop and deliver documentation, tutorial materials, and live training classes; and (9) Be prepared to support outside users who wish to contribute to the codes

Cluster, Classify, Regress: A General Method For Learning Discountinous Functions

This paper presents a method for solving the supervised learning problem in which the output is highly nonlinear and discontinuous. It is proposed to solve this problem in three stages: (i) cluster the pairs of input-output data points, resulting in a label for each point; (ii) classify the data, where the corresponding label is the output; and finally (iii) perform one separate regression for each class, where the training data corresponds to the subset of the original input-output pairs which have that label according to the classifier. It has not yet been proposed to combine these 3 fundamental building blocks of machine learning in this simple and powerful fashion. This can be viewed as a form of deep learning, where any of the intermediate layers can itself be deep. The utility and robustness of the methodology is illustrated on some toy problems, including one example problem arising from simulation of plasma fusion in a tokamak.Comment: 12 files,6 figure

Giving RSEs a Larger Stage through the Better Scientific Software Fellowship

The Better Scientific Software Fellowship (BSSwF) was launched in 2018 to foster and promote practices, processes, and tools to improve developer productivity and software sustainability of scientific codes. BSSwF's vision is to grow the community with practitioners, leaders, mentors, and consultants to increase the visibility of scientific software production and sustainability. Over the last five years, many fellowship recipients and honorable mentions have identified as research software engineers (RSEs). This paper provides case studies from several of the program's participants to illustrate some of the diverse ways BSSwF has benefited both the RSE and scientific communities. In an environment where the contributions of RSEs are too often undervalued, we believe that programs such as BSSwF can be a valuable means to recognize and encourage community members to step outside of their regular commitments and expand on their work, collaborations and ideas for a larger audience.Comment: submitted to Computing in Science & Engineering (CiSE), Special Issue on the Future of Research Software Engineers in the U

COMPOSE-HPC: A Transformational Approach to Exascale

The goal of the COMPOSE-HPC project is to 'democratize' tools for automatic transformation of program source code so that it becomes tractable for the developers of scientific applications to create and use their own transformations reliably and safely. This paper describes our approach to this challenge, the creation of the KNOT tool chain, which includes tools for the creation of annotation languages to control the transformations (PAUL), to perform the transformations (ROTE), and optimization and code generation (BRAID), which can be used individually and in combination. We also provide examples of current and future uses of the KNOT tools, which include transforming code to use different programming models and environments, providing tests that can be used to detect errors in software or its execution, as well as composition of software written in different programming languages, or with different threading patterns

Community Organizations: Changing the Culture in Which Research Software Is Developed and Sustained

Software is the key crosscutting technology that enables advances in mathematics, computer science, and domain-specific science and engineering to achieve robust simulations and analysis for science, engineering, and other research fields. However, software itself has not traditionally received focused attention from research communities; rather, software has evolved organically and inconsistently, with its development largely as by-products of other initiatives. Moreover, challenges in scientific software are expanding due to disruptive changes in computer hardware, increasing scale and complexity of data, and demands for more complex simulations involving multiphysics, multiscale modeling and outer-loop analysis. In recent years, community members have established a range of grass-roots organizations and projects to address these growing technical and social challenges in software productivity, quality, reproducibility, and sustainability. This article provides an overview of such groups and discusses opportunities to leverage their synergistic activities while nurturing work toward emerging software ecosystems

Computational Thermochemistry and Benchmarking of Reliable Methods

During the first and second years of the Computational Thermochemistry and Benchmarking of Reliable Methods project, we completed several studies using the parallel computing capabilities of the NWChem software and Molecular Science Computing Facility (MSCF), including large-scale density functional theory (DFT), second-order Moeller-Plesset (MP2) perturbation theory, and CCSD(T) calculations. During the third year, we continued to pursue the computational thermodynamic and benchmarking studies outlined in our proposal. With the issues affecting the robustness of the coupled cluster part of NWChem resolved, we pursued studies of the heats-of-formation of compounds containing 5 to 7 first- and/or second-row elements and approximately 10 to 14 hydrogens. The size of these systems, when combined with the large basis sets (cc-pVQZ and aug-cc-pVQZ) that are necessary for extrapolating to the complete basis set limit, creates a formidable computational challenge, for which NWChem on NWMPP1 is well suited