Comment on “Biological interactions as determinants of distributions of benthic invertebrates within the substrate of stony streams” (Peckarsky)

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/109797/1/lno19812650981.pd

Size-frequency estimates of secondary production by Mysis relicta in Lakes Michigan and Huron

Data from five Great Lakes studies of Mysis relicta populations were reanalyzed to calculate secondary production estimates using the size-frequency method. Production estimates (P) ranged from 0.25 to 3.2 g dry weight m −2 yr −1 . Average annual biomass {xxB} and mean annual density (xxD) were 0.11–1.11 g dry weight/ m 2 and 25–434 animals/ m 2 , respectively. P:{xxB} ratios varied only between 2.2 and 3.3. Maximum and minimum biomass values within a study varied by a factor of 519 for one study but by less than 17 for the others. Highest estimates of P, {xxB} and {xxD} were calculated for collections from a 50-m station in Lake Michigan despite the larger populations suspected to be present at greater depths sampled in the other studies. These conservative estimates provide a basis for scaling trophic interactions involving M. relicta and emphasize findings by previous workers that night-time sampling with vertical net hauls is the best available technique for quantitative studies of M. relicta populations in the Great Lakes.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/42915/1/10750_2004_Article_BF00008100.pd

A water quality survey of Munro Lake, Michigan

Bibliography: p. 32http://deepblue.lib.umich.edu/bitstream/2027.42/49261/2/2194174.0007.001.pd

Zooplankton sampling strategies for environmental studies

This study characterizes sources of variation in total zooplankton abundance estimates at seven stations within the 5–10 m depth contour of southeastern Lake Michigan which were sampled monthly, April through October, for the 1975 to 1979 period. Month, year, and station were statistically significant factors affecting abundance estimates as were all interactions. Month was the largest source of variance either as a main effect or interaction. Smallest coefficients of variation were associated with subsampling (mean 6.1%) and replicate sampling (mean 15.1%). The between-station coefficient of variation averaged 39.0% and tended to be highest during the summer. For a given station and month, the between-year coefficient of variation averaged 73.4% while the between-month coefficient of variation for a single station in a given year averaged 95.1%. A table shows the estimated number of replications necessary to detect a true difference in two population means as a function of coefficient of variation. Environmental studies designed to detect spatial alterations should conduct such analyses on a cruise-by-cruise basis. Cruises should consist of a large number of stations and be conducted at least once during each season. Studies designed to detect temporal alterations require more frequent sampling because of the greater variability associated with temporal data sets. Because spatial variability adds little to the overall variability of such data sets, only a few representative stations need be sampled during each cruise.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/42924/1/10750_2004_Article_BF00008773.pd

Determining the density dependence of immigration and emigration of benthic stream invertebrates: theoretical considerations

Simple mathematical models are formulated to describe density independent and density dependent dispersal. These models clarify hypotheses of density dependence and may be manipulated easily to suit particular applications. The models demonstrate that the initial composition of a species aggregate must be controlled before valid conclusions can be drawn about the density dependency of the aggregate's dispersal. Stochastic models of emigration are derived to assess the power of particular experimental designs and statistical techniques to discriminate a known form of density dependent emigration.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/42863/1/10750_2004_Article_BF00028182.pd

Mesh size and collection characteristics of 50-cm diameter conical plankton nets

This paper compares collection characteristics of #2-(363 µm), #10-(156 µm), and #20-(76 µm) mesh conical plankton nets: dimensions were 50-cm diameter by 1.6-m long. The #2-mesh net severely underestimated the abundances of Lake Michigan copepods and cladocerans with the exception of the largest species ( Limnocalanus macrurus ). Zooplankton abundance estimates were more similar for the #10- and #20-mesh nets collections. Nauplii, however, were severely undersampled by the #10-mesh net with abundance estimates approximately 8 to 12 times lower than for the #20-mesh net collections. Most other larger zooplankton were 50% more abundant in the 20-mesh net collections than in the #10-mesh net collections: such consistent differences occurred despite large variations in taxa size. This indicates that a sampling bias occurred other than the loss of zooplankton through the meshes of the #10 net. We hypothesize that, by incorrectly locating the flowmeter in the mouth of the plankton net, we underestimated the volume of water filtered by the easily-clogged #20-mesh net and therefore overestimated taxa abundances. We conclude that the #10-mesh net provided accurate estimates of microcrustacean zooplankton abundances except for nauplii. The #10-mesh net used in our study had a filtration area ratio of 3.06 and operated at a calculated average filtration efficiency of 98%. The #20-mesh net had a filtration area ratio of 1.86 and operated at calculated average filtration efficiencies ranging from 64.7% (41.7 m station) to 79.6% (6.3 m station). Calculations are presented which show how the filtration efficiencies of the nets used in our study could be improved by net redesign.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/42868/1/10750_2004_Article_BF00032095.pd

Altering α-dystroglycan receptor affinity of LCMV pseudotyped lentivirus yields unique cell and tissue tropism

BACKGROUND: The envelope glycoprotein of lymphocytic choriomeningitis virus (LCMV) can efficiently pseudotype lentiviral vectors. Some strains of LCMV exploit high affinity interactions with α-dystroglycan (α-DG) to bind to cell surfaces and subsequently fuse in low pH endosomes. LCMV strains with low α-DG affinity utilize an unknown receptor and display unique tissue tropisms. We pseudotyped non-primate feline immunodeficiency virus (FIV) vectors using LCMV derived glycoproteins with high or low affinity to α-DG and evaluated their properties in vitro and in vivo. METHODS: We pseudotyped FIV with the LCMV WE54 strain envelope glycoprotein and also engineered a point mutation in the WE54 envelope glycoprotein (L260F) to diminish α-DG affinity and direct binding to alternate receptors. We hypothesized that this change would alter in vivo tissue tropism and enhance gene transfer to neonatal animals. RESULTS: In mice, hepatic α- and β-DG expression was greatest at the late gestational and neonatal time points. When displayed on the surface of the FIV lentivirus the WE54 L260F mutant glycoprotein bound weakly to immobilized α-DG. Additionally, LCMV WE54 pseudotyped FIV vector transduction was neutralized by pre-incubation with soluble α-DG, while the mutant glycoprotein pseudotyped vector was not. In vivo gene transfer in adult mice with either envelope yielded low transduction efficiencies in hepatocytes following intravenous delivery. In marked contrast, neonatal gene transfer with the LCMV envelopes, and notably with the FIV-L260F vector, conferred abundant liver and lower level cardiomyocyte transduction as detected by luciferase assays, bioluminescent imaging, and β-galactosidase staining. CONCLUSIONS: These results suggest that a developmentally regulated receptor for LCMV is expressed abundantly in neonatal mice. LCMV pseudotyped vectors may have applications for neonatal gene transfer. ABBREVIATIONS: Armstrong 53b (Arm53b); baculovirus Autographa californica GP64 (GP64); charge-coupled device (CCD); dystroglycan (DG); feline immunodeficiency virus (FIV); glycoprotein precursor (GP-C); firefly luciferase (Luc); lymphocytic choriomeningitis virus (LCMV); nuclear targeted β-galactosidase (ntLacZ); optical density (OD); PBS/0.1% (w/v) Tween-20 (PBST); relative light units (RLU); Rous sarcoma virus (RSV); transducing units per milliliter (TU/ml); vesicular stomatitis virus (VSV-G); wheat germ agglutinin (WGA); 50% reduction in binding (C50)

Altering α-dystroglycan receptor affinity of LCMV pseudotyped lentivirus yields unique cell and tissue tropism

BACKGROUND: The envelope glycoprotein of lymphocytic choriomeningitis virus (LCMV) can efficiently pseudotype lentiviral vectors. Some strains of LCMV exploit high affinity interactions with α-dystroglycan (α-DG) to bind to cell surfaces and subsequently fuse in low pH endosomes. LCMV strains with low α-DG affinity utilize an unknown receptor and display unique tissue tropisms. We pseudotyped non-primate feline immunodeficiency virus (FIV) vectors using LCMV derived glycoproteins with high or low affinity to α-DG and evaluated their properties in vitro and in vivo. METHODS: We pseudotyped FIV with the LCMV WE54 strain envelope glycoprotein and also engineered a point mutation in the WE54 envelope glycoprotein (L260F) to diminish α-DG affinity and direct binding to alternate receptors. We hypothesized that this change would alter in vivo tissue tropism and enhance gene transfer to neonatal animals. RESULTS: In mice, hepatic α- and β-DG expression was greatest at the late gestational and neonatal time points. When displayed on the surface of the FIV lentivirus the WE54 L260F mutant glycoprotein bound weakly to immobilized α-DG. Additionally, LCMV WE54 pseudotyped FIV vector transduction was neutralized by pre-incubation with soluble α-DG, while the mutant glycoprotein pseudotyped vector was not. In vivo gene transfer in adult mice with either envelope yielded low transduction efficiencies in hepatocytes following intravenous delivery. In marked contrast, neonatal gene transfer with the LCMV envelopes, and notably with the FIV-L260F vector, conferred abundant liver and lower level cardiomyocyte transduction as detected by luciferase assays, bioluminescent imaging, and β-galactosidase staining. CONCLUSIONS: These results suggest that a developmentally regulated receptor for LCMV is expressed abundantly in neonatal mice. LCMV pseudotyped vectors may have applications for neonatal gene transfer. ABBREVIATIONS: Armstrong 53b (Arm53b); baculovirus Autographa californica GP64 (GP64); charge-coupled device (CCD); dystroglycan (DG); feline immunodeficiency virus (FIV); glycoprotein precursor (GP-C); firefly luciferase (Luc); lymphocytic choriomeningitis virus (LCMV); nuclear targeted β-galactosidase (ntLacZ); optical density (OD); PBS/0.1% (w/v) Tween-20 (PBST); relative light units (RLU); Rous sarcoma virus (RSV); transducing units per milliliter (TU/ml); vesicular stomatitis virus (VSV-G); wheat germ agglutinin (WGA); 50% reduction in binding (C50)

A statistical analysis of subsampling and an evaluation of the Folsom plankton splitter

Subsampling techniques are important for the determination of precise plankton density estimates. A binomial model of random subsampling, and its Poisson extension, were developed for the purpose of evaluating the performance of compartment-type plankton subsamplers. Two approaches were used to assess the performance of the Folsom plankton splitter on an extensive series of nearshore Lake Michigan crustacean zooplankton samples collected between 1974 and 1979. First, Folsom subsamples were observed to be significantly (p < 0.05) more variable than expected from the random model of subsampling. Second, a random effects ANOVA model was used to compare fractions of the total variance in density estimates that were attributable to subsampling and sampling phases of a specially designed study. Departures from randomness in subsampling were sufficiently small that an analysis of optimal allocation of effort between subsampling and sampling phases, based on the ANOVA model, indicated that only one to three subsamples needed to be examined per sample.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/42920/1/10750_2004_Article_BF00016403.pd