690 research outputs found
Workplace Safety Concerns among Co-workers of Responder Returning from Ebola-Affected Country
We surveyed public health co-workers regarding attitudes toward a physician who returned to New Hampshire after volunteering in the West African Ebola outbreak. An unexpectedly large (18.0%) proportion of staff expressed discomfort with the Ebola responder returning to work. Employers should take proactive steps to address employee fears and concerns
Inter-individual variation in nucleotide excision repair in young adults: effects of age, adiposity, micronutrient supplementation and genotype
Nucleotide excision repair (NER) is responsible for repairing bulky helix-distorting DNA lesions and is essential for the maintenance of genomic integrity. Severe hereditary impairment of NER leads to cancers such as those in xeroderma pigmentosum, and more moderate reductions in NER capacity have been associated with an increased cancer risk. Diet is a proven modifier of cancer risk but few studies have investigated the potential relationships between diet and NER. In the present study, the plasmid-based host cell reactivation assay was used to measure the NER capacity in peripheral blood mononuclear cells from fifty-seven volunteers aged 18–30 years before and after 6 weeks of supplementation with micronutrients (selenium and vitamins A, C and E). As a control, nine individuals remained unsupplemented over the same period. Volunteers were genotyped for the following polymorphisms in NER genes: ERCC5 Asp1104His (rs17655); XPC Lys939Gln (rs2228001); ERCC2 Lys751Gnl (rs13181); XPC PAT (an 83 bp poly A/T insertion–deletion polymorphism in the XPC gene). NER capacity varied 11-fold between individuals and was inversely associated with age and endogenous DNA strand breaks. For the first time, we observed an inverse association between adiposity and NER. No single polymorphism was associated with the NER capacity, although significant gene–gene interactions were observed between XPC Lys939Gln and ERCC5 Asp1104His and XPC Lys939Gln and ERCC2 Lys751Gnl. While there was no detectable effect of micronutrient supplementation on NER capacity, there was evidence that the effect of fruit intake on the NER capacity may be modulated by the ERCC2 Lys751Gnl single nucleotide polymorphism
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Warming Ocean Conditions Relate to Increased Trophic Requirements of Threatened and Endangered Salmon
The trophic habits, size and condition of yearling Chinook salmon (Oncorhynchus tshawytscha) caught early in their marine residence were examined during 19 survey years (1981–1985; 1998–2011). Juvenile salmon consumed distinct highly piscivorous diets in cold and warm ocean regimes with major differences between ocean regimes driven by changes in consumption of juvenile rockfishes, followed by several other fish prey, adult euphausiids and decapod larvae. Notable, Chinook salmon consumed 30% more food in the warm versus cold ocean regime in both May and June. Additionally, there were about 30% fewer empty stomachs in the warm ocean regime in May, and 10% fewer in warm June periods. The total prey energy density consumed during the warmer ocean regime was also significantly higher than in cold. Chinook salmon had lower condition factor and were smaller in fork length during the warm ocean regime, and were longer and heavier for their size during the cold ocean regime. The significant increase in foraging during the warm ocean regime occurred concurrently with lower available prey biomass. Adult return rates of juvenile Chinook salmon that entered the ocean during a warm ocean regime were lower. Notably, our long term data set contradicts the long held assertion that juvenile salmon eat less in a warm ocean regime when low growth and survival is observed, and when available prey are reduced. Comparing diet changes between decades under variable ocean conditions may assist us in understanding the effects of projected warming ocean regimes on juvenile Chinook salmon and their survival in the ocean environment. Bioenergetically, the salmon appear to require more food resources during warm ocean regimes
Determining the Food Choice Motivations of Irish Teens and Their Association with Dietary Intakes, Using the Food Choice Questionnaire
During adolescence, teens start making their own food choices. While health and nutrition are important, practical and social concerns are also influential. This study aims to determine factors that motivate the food choices of Irish teens (using Food Choice Questionnaire), using data from the National Teens\u27 Food Survey II (N = 428, 50% male, 13-18 years), and to identify how these motivations relate to dietary intakes (4-day semi-weighed food diaries). Data analysis used PCA to determine the food choice motivation subscales, and correlation and comparative statistical tests (t-test, ANOVA). Eight motivating factors were identified for Irish teens: Sensory Appeal, Price & Availability, Health & Natural Content, Familiarity, Ease of Preparation, Mood, Weight Control, and Ethical Concerns. Health and practical aspects to food choice (Price, Availability, Ease of Preparation) are important for teens, but taste (Sensory Appeal) remains a key influence. Food choice motivations vary by sex and by age, BMI status and weight perception, where girls were more motivated by health, weight control, mood and ethical concerns, and older teens were more influenced by mood and ease of preparation. Both those classified as overweight and those who perceived they were overweight were motivated more by weight control and mood for their food choices, whereas those who perceived their weight to be correct placed more importance on health and natural content. Those motivated by weight control had lower energy and higher protein intakes, and those motivated by health and natural content had more health promoting behaviours, with higher physical activity, lower screen time, and higher protein intakes. Understanding the motivations of teens\u27 food choice can help understand why they struggle to meet dietary recommendations, and help to develop more effective health promotion messages by capitalising on the key motivations in the population
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Evidence that summer jellyfish blooms impact Pacific Northwest salmon production
Interannual variability in salmon (Oncorhynchus spp.) production in the northeast Pacific is understood to be driven by oceanographic variability and bottom-up processes affecting prey availability to juvenile salmon. Scyphozoan jellyfish have an important role in shaping the pathways of energy flow through pelagic food webs. While jellyfish obtain high production rates and biomasses as major consumers of zooplankton production, they have few predators and may divert plankton production away from higher trophic levels. Although jellyfish are planktivorous and juvenile coho (O. kisutch) and Chinook (O. tshawytscha) salmon are mainly piscivorous, they may be indirect competitors for plankton production. Ecosystem model simulations suggested that among all trophic interactions within the Pacific Northwest coastal food web, juvenile salmon are particularly sensitive to jellyfish blooms, and that salmon production will be suppressed in years of high summer jellyfish biomass. Pelagic surveys off Oregon and Washington (1999–2012) were used to examine the interannual relationship between salmon production and the dominant jellyfish species, the sea nettle Chrysaora fuscescens, off the Pacific Northwest coast. There was a significant, negative correlation between sea nettle biomass and the strength of adult coho and Chinook salmon returns to the Columbia River. Examination of spatial distributions across years showed a positive association between sea nettles and salmon. Within individual years, significant differences between the distribution of sea nettles and yearling coho and Chinook salmon generally occurred during cooler ocean summers, perhaps due to the greater expanse of optimal salmon habitat resulting from more upwelling. Whether the association is behavioral or a product of oceanographic processes, association enhances the opportunity for indirect competition. Examination of feeding incidence in September showed that salmon stomachs were less full at locations with higher sea nettle biomass
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Diet variability of forage fishes in the Northern California Current System
As fisheries management shifts to an ecosystem-based approach, understanding energy pathways and trophic relationships in the Northern California Current (NCC) will become increasingly important for predictive modeling and understanding ecosystem response to changing ocean conditions. In the NCC, pelagic forage fishes are a critical link between seasonal and interannual variation in primary production and upper trophic groups. We compared diets among dominant forage fish (sardines, anchovies, herring, and smelts) in the NCC collected in May and June of 2011 and June 2012, and found high diet variability between and within species on seasonal and annual time scales, and also on decadal scales when compared to results of past studies conducted in the early 2000s. Copepoda were a large proportion by weight of several forage fish diets in 2011 and 2012, which differed from a preponderance of Euphausiidae found in previous studies, even though all years exhibited cool ocean conditions. We also examined diet overlap among these species and with co-occurring subyearling Chinook salmon and found that surf smelt diets overlapped more with subyearling Chinook diets than any other forage fish. Herring and sardine diets overlapped the most with each other in our interdecadal comparisons and some prey items were common to all forage fish diets. Forage fish that show plasticity in diet may be more adapted to ocean conditions of low productivity or anomalous prey fields. These findings highlight the variable and not well-understood connections between ocean conditions and energy pathways within the NCC.Keywords: Pelagic nekton, Forage fish diet composition, Juvenile salmon diets, Seasonal variability, Diet overlap, Interannual variabilit
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Surface distribution of brachyuran megalopae and ichthyoplankton in the Columbia River plume during transition from downwelling to upwelling conditions
In the California Current coastal boundary zone, the spring transition between downwelling and upwelling conditions, along with the fluctuating structure of the Columbia River plume, creates highly dynamic interactions. In this study, we investigated whether the surface distribution of brachyuran larvae and ichthyoplankton would track the dynamics of the Columbia River plume. By happenstance, the cruise period coincided with the spring transition from downwelling to sustained upwelling conditions in 2010, a year when the transition was delayed and Columbia River flow was substantially higher than average. We used time series of wind and freshwater input to evaluate the influence of physical forcing on oceanographic patterns, and sampled hydrography and surface plankton concentrations within a 182 km(2) grid off Willapa Bay, WA. Additionally, two longer transects, one cross-shelf and the other along-shore, were made to discern the extent of plume influence on larval crab and fish abundance. We found that plume waters that were trapped in a northward-flowing coastal-boundary current during downwelling conditions were advected offshore after several days of upwelling-favorable winds. Neustonic collections of brachyuran larvae and ichthyoplankton varied in response to this large seaward advective event. Megalopae of cancrid crabs exhibited patterns of both offshore transport (Cancer oregonensis/productus) and nearshore retention (C. magister). Additionally, abundant numbers of large juvenile widow (Sebastes entomelas) and yellowtail (S. flavidus) rockfish of a size appropriate for settlement were sampled during a period when ocean conditions favored high recruitment success. These results demonstrated that the response of planktonic crab larvae and ichthyoplankton to large-scale advection varied by species, with larger and more vagile fish exhibiting less evidence of passive transport than smaller crab larvae. Importantly, portions of the planktonic fish and crab community were able to maintain nearshore distributions in favorable settlement habitat, despite physical advection offshore. Published by Elsevier Ltd.Keywords: Crab megalopae, Neuston, Juvenile fishes, California Current, Upwelling, Columbia River plum
Phomopsis bougainvilleicola prepatellar bursitis in a renal transplant recipient
Prepatellar bursitis is typically a monomicrobial bacterial infection. A fungal cause is rarely identified. We describe a 61-year-old man who had received a renal transplant 21 months prior to presentation whose synovial fluid and surgical specimens grew Phomopsis bougainvilleicola, a pycnidial coelomycete
Survey of variation in human transcription factors reveals prevalent DNA binding changes
Published in final edited form as:
Science. 2016 Mar 25; 351(6280): 1450–1454.
Published online 2016 Mar 24. doi: 10.1126/science.aad2257Sequencing of exomes and genomes has revealed abundant genetic variation affecting the coding sequences of human transcription factors (TFs), but the consequences of such variation remain largely unexplored. We developed a computational, structure-based approach to evaluate TF variants for their impact on DNA binding activity and used universal protein-binding microarrays to assay sequence-specific DNA binding activity across 41 reference and 117 variant alleles found in individuals of diverse ancestries and families with Mendelian diseases. We found 77 variants in 28 genes that affect DNA binding affinity or specificity and identified thousands of rare alleles likely to alter the DNA binding activity of human sequence-specific TFs. Our results suggest that most individuals have unique repertoires of TF DNA binding activities, which may contribute to phenotypic variation.National Institutes of Health; NHGRI R01 HG003985; P50 HG004233; A*STAR National Science Scholarship; National Science Foundatio
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