Analysis of the Movement of Chlamydomonas Flagella: The Function of the Radial-spoke System Is Revealed by Comparison of Wild-type and Mutant Flagella

The mutation uni-1 gives rise to uniflagellate Chlamydomonas cells which rotate around a fixed point in the microscope field, so that the flagellar bending pattern can be photographed easily . This has allowed us to make a detailed analysis of the wild-type flagellar bending pattern and the bending patterns of flagella on several mutant strains. Cells containing uni-1, and recombinants of uni-1 with the suppressor mutations, sup(_pf)-1 and sup(_pf)-3, show the typical asymmetric bending pattern associated with forward swimming in Chlamydomonas, although sup(_pf)-1 flagella have about one-half the normal beat frequency, apparently as the result of defective function of the outer dynein arms. The pf-17 mutation has been shown to produce nonmotile flagella in which radial spoke heads and five characteristic axonemal polypeptides are missing. Recombinants containing pf-17 and either sup(_pf)-1 or sup(_pf)-3 have motile flagella, but still lack radial-spoke heads and the associated polypeptides . The flagellar bending pattern of these recombinants lacking radial-spoke heads is a nearly symmetric, large amplitude pattern which is quite unlike the wild-type pattern . However, the presence of an intact radial-spoke system is not required to convert active sliding into bending and is not required for bend initiation and bend propagation, since all of these processes are active in the sup(_pf) pf-17 recombinants. The function of the radial-spoke system appears to be to convert the symmetric bending pattern displayed by these recombinants into the asymmetric bending pattern required for efficient swimming, by inhibiting the development of reverse bends during the recovery phase of the bending cycle

Statistics of quantum transmission in one dimension with broad disorder

We study the statistics of quantum transmission through a one-dimensional disordered system modelled by a sequence of independent scattering units. Each unit is characterized by its length and by its action, which is proportional to the logarithm of the transmission probability through this unit. Unit actions and lengths are independent random variables, with a common distribution that is either narrow or broad. This investigation is motivated by results on disordered systems with non-stationary random potentials whose fluctuations grow with distance. In the statistical ensemble at fixed total sample length four phases can be distinguished, according to the values of the indices characterizing the distribution of the unit actions and lengths. The sample action, which is proportional to the logarithm of the conductance across the sample, is found to obey a fluctuating scaling law, and therefore to be non-self-averaging, in three of the four phases. According to the values of the two above mentioned indices, the sample action may typically grow less rapidly than linearly with the sample length (underlocalization), more rapidly than linearly (superlocalization), or linearly but with non-trivial sample-to-sample fluctuations (fluctuating localization).Comment: 26 pages, 4 figures, 1 tabl

Absence of localization in a disordered one-dimensional ring threaded by an Aharonov-Bohm flux

Absence of localization is demonstrated analytically to leading order in weak disorder in a one-dimensional Anderson model of a ring threaded by an Aharonov-Bohm (A-B) flux. The result follows from adapting an earlier perturbation treatment of disorder in a superconducting ring subjected to an imaginary vector potential proportional to a depinning field for flux lines bound to random columnar defects parallel to the axis of the ring. The absence of localization in the ring threaded by an A-B flux for sufficiently weak disorder is compatible with large free electron type persistent current obtained in recent studies of the above model

Dynamics at the angle of repose: jamming, bistability, and collapse

When a sandpile relaxes under vibration, it is known that its measured angle of repose is bistable in a range of values bounded by a material-dependent maximal angle of stability; thus, at the same angle of repose, a sandpile can be stationary or avalanching, depending on its history. In the nearly jammed slow dynamical regime, sandpile collapse to a zero angle of repose can also occur, as a rare event. We claim here that fluctuations of {\it dilatancy} (or local density) are the key ingredient that can explain such varied phenomena. In this work, we model the dynamics of the angle of repose and of the density fluctuations, in the presence of external noise, by means of coupled stochastic equations. Among other things, we are able to describe sandpile collapse in terms of an activated process, where an effective temperature (related to the density as well as to the external vibration intensity) competes against the configurational barriers created by the density fluctuations.Comment: 15 pages, 1 figure. Minor changes and update

Object Segmentation in Images using EEG Signals

This paper explores the potential of brain-computer interfaces in segmenting objects from images. Our approach is centered around designing an effective method for displaying the image parts to the users such that they generate measurable brain reactions. When an image region, specifically a block of pixels, is displayed we estimate the probability of the block containing the object of interest using a score based on EEG activity. After several such blocks are displayed, the resulting probability map is binarized and combined with the GrabCut algorithm to segment the image into object and background regions. This study shows that BCI and simple EEG analysis are useful in locating object boundaries in images.Comment: This is a preprint version prior to submission for peer-review of the paper accepted to the 22nd ACM International Conference on Multimedia (November 3-7, 2014, Orlando, Florida, USA) for the High Risk High Reward session. 10 page

Competition and cooperation:aspects of dynamics in sandpiles

In this article, we review some of our approaches to granular dynamics, now well known to consist of both fast and slow relaxational processes. In the first case, grains typically compete with each other, while in the second, they cooperate. A typical result of {\it cooperation} is the formation of stable bridges, signatures of spatiotemporal inhomogeneities; we review their geometrical characteristics and compare theoretical results with those of independent simulations. {\it Cooperative} excitations due to local density fluctuations are also responsible for relaxation at the angle of repose; the {\it competition} between these fluctuations and external driving forces, can, on the other hand, result in a (rare) collapse of the sandpile to the horizontal. Both these features are present in a theory reviewed here. An arena where the effects of cooperation versus competition are felt most keenly is granular compaction; we review here a random graph model, where three-spin interactions are used to model compaction under tapping. The compaction curve shows distinct regions where 'fast' and 'slow' dynamics apply, separated by what we have called the {\it single-particle relaxation threshold}. In the final section of this paper, we explore the effect of shape -- jagged vs. regular -- on the compaction of packings near their jamming limit. One of our major results is an entropic landscape that, while microscopically rough, manifests {\it Edwards' flatness} at a macroscopic level. Another major result is that of surface intermittency under low-intensity shaking.Comment: 36 pages, 23 figures, minor correction

Realistic model of correlated disorder and Anderson localization

A conducting 1D line or 2D plane inside (or on the surface of) an insulator is considered.Impurities displace the charges inside the insulator. This results in a long-range fluctuating electric field acting on the conducting line (plane). This field can be modeled by that of randomly distributed electric dipoles. This model provides a random correlated potential with decaying as 1/k . In the 1D case such correlations give essential corrections to the localization length but do not destroy Anderson localization

Structure of the stationary state of the asymmetric target process

We introduce a novel migration process, the target process. This process is dual to the zero-range process (ZRP) in the sense that, while for the ZRP the rate of transfer of a particle only depends on the occupation of the departure site, it only depends on the occupation of the arrival site for the target process. More precisely, duality associates to a given ZRP a unique target process, and vice-versa. If the dynamics is symmetric, i.e., in the absence of a bias, both processes have the same stationary-state product measure. In this work we focus our interest on the situation where the latter measure exhibits a continuous condensation transition at some finite critical density $\rho_c$, irrespective of the dimensionality. The novelty comes from the case of asymmetric dynamics, where the target process has a nontrivial fluctuating stationary state, whose characteristics depend on the dimensionality. In one dimension, the system remains homogeneous at any finite density. An alternating scenario however prevails in the high-density regime: typical configurations consist of long alternating sequences of highly occupied and less occupied sites. The local density of the latter is equal to $\rho_c$ and their occupation distribution is critical. In dimension two and above, the asymmetric target process exhibits a phase transition at a threshold density $\rho_0$ much larger than $\rho_c$. The system is homogeneous at any density below $\rho_0$, whereas for higher densities it exhibits an extended condensate elongated along the direction of the mean current, on top of a critical background with density $\rho_c$.Comment: 30 pages, 16 figure

The ART of IAM: The Winning Strategy for the 2006 Competition

In many dynamic open systems, agents have to interact with one another to achieve their goals. Here, agents may be self-interested, and when trusted to perform an action for others, may betray that trust by not performing the actions as required. In addition, due to the size of such systems, agents will often interact with other agents with which they have little or no past experience. This situation has led to the development of a number of trust and reputation models, which aim to facilitate an agent's decision making in the face of uncertainty regarding the behaviour of its peers. However, these multifarious models employ a variety of different representations of trust between agents, and measure performance in many different ways. This has made it hard to adequately evaluate the relative properties of different models, raising the need for a common platform on which to compare competing mechanisms. To this end, the ART Testbed Competition has been proposed, in which agents using different trust models compete against each other to provide services in an open marketplace. In this paper, we present the winning strategy for this competition in 2006, provide an analysis of the factors that led to this success, and discuss lessons learnt from the competition about issues of trust in multiagent systems in general. Our strategy, IAM, is Intelligent (using statistical models for opponent modelling), Abstemious (spending its money parsimoniously based on its trust model) and Moral (providing fair and honest feedback to those that request it)