The spin-echo system reconsidered

Simple models have played an important role in the discussion of foundational issues in statistical mechanics. Among them the spin--echo system is of particular interest since it can be realized experimentally. This has led to inferences being drawn about approaches to the foundations of statistical mechanics, particularly with respect to the use of coarse-graining. We examine these claims with the help of computer simulations

SUPPORT Tools for evidence-informed health Policymaking (STP) 13: Preparing and using policy briefs to support evidence-informed policymaking

This article is part of a series written for people responsible for making decisions about health policies and programmes and for those who support these decision makers

SUPPORT Tools for evidence-informed health Policymaking (STP)

This article is the Introduction to a series written for people responsible for making decisions about health policies and programmes and for those who support these decision makers

SUPPORT Tools for evidence-informed health Policymaking (STP) 7: Finding systematic reviews

This article is part of a series written for people responsible for making decisions about health policies and programmes and for those who support these decision makers

SUPPORT Tools for evidence-informed health Policymaking (STP) 14: Organising and using policy dialogues to support evidence-informed policymaking

This article is part of a series written for people responsible for making decisions about health policies and programmes and for those who support these decision makers

Robust model-based analysis of single-particle tracking experiments with Spot-On.

Single-particle tracking (SPT) has become an important method to bridge biochemistry and cell biology since it allows direct observation of protein binding and diffusion dynamics in live cells. However, accurately inferring information from SPT studies is challenging due to biases in both data analysis and experimental design. To address analysis bias, we introduce 'Spot-On', an intuitive web-interface. Spot-On implements a kinetic modeling framework that accounts for known biases, including molecules moving out-of-focus, and robustly infers diffusion constants and subpopulations from pooled single-molecule trajectories. To minimize inherent experimental biases, we implement and validate stroboscopic photo-activation SPT (spaSPT), which minimizes motion-blur bias and tracking errors. We validate Spot-On using experimentally realistic simulations and show that Spot-On outperforms other methods. We then apply Spot-On to spaSPT data from live mammalian cells spanning a wide range of nuclear dynamics and demonstrate that Spot-On consistently and robustly infers subpopulation fractions and diffusion constants

Anomalous latent heat in non-equilibrium phase transitions

We study first-order phase transitions in a two-temperature system, where due to the time-scale separation all the basic thermodynamical quantities (free energy, entropy, etc) are well-defined. The sign of the latent heat is found to be counterintuitive: it is positive when going from the phase where the temperatures and the entropy are higher to the one where these quantities are lower. The effect exists only out of equilibrium and requires conflicting interactions. It is displayed on a lattice gas model of ferromagnetically interacting spin-1/2 particles.Comment: 4 pages, 2 figure

SUPPORT Tools for evidence-informed health Policymaking (STP) 4: Using research evidence to clarify a problem

This article is part of a series written for people responsible for making decisions about health policies and programmes and for those who support these decision makers

Exactly Solvable Model of Monomer-Monomer Reactions on a Two-Dimensional Random Catalytic Substrate

We present an \textit{exactly solvable} model of a monomer-monomer $A + B \to \emptyset$ reaction on a 2D inhomogeneous, catalytic substrate and study the equilibrium properties of the two-species adsorbate. The substrate contains randomly placed catalytic bonds of mean density $q$ which connect neighboring adsorption sites. The interacting $A$ and $B$ (monomer) species undergo continuous exchanges with corresponding adjacent gaseous reservoirs. A reaction $A + B \to \emptyset$ takes place instantaneously if $A$ and $B$ particles occupy adsorption sites connected by a catalytic bond. We find that for the case of \textit{annealed} disorder in the placement of the catalytic bonds the reaction model under study can be mapped onto the general spin $S = 1$ (GS1) model. Here we concentrate on a particular case in which the model reduces to an exactly solvable Blume-Emery-Griffiths (BEG) model (T. Horiguchi, Phys. Lett. A {\bf 113}, 425 (1986); F.Y. Wu, Phys. Lett. A, {\bf 116}, 245 (1986)) and derive an exact expression for the disorder-averaged equilibrium pressure of the two-species adsorbate. We show that at equal partial vapor pressures of the $A$ and $B$ species this system exhibits a second-order phase transition which reflects a spontaneous symmetry breaking with large fluctuations and progressive coverage of the entire substrate by either one of the species.Comment: 4 pages, 2 figures, submitted to Phys. Rev. Let