108 research outputs found

    Promoter Complexity and Tissue-Specific Expression of Stress Response Components in Mytilus galloprovincialis, a Sessile Marine Invertebrate Species

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    The mechanisms of stress tolerance in sessile animals, such as molluscs, can offer fundamental insights into the adaptation of organisms for a wide range of environmental challenges. One of the best studied processes at the molecular level relevant to stress tolerance is the heat shock response in the genus Mytilus. We focus on the upstream region of Mytilus galloprovincialis Hsp90 genes and their structural and functional associations, using comparative genomics and network inference. Sequence comparison of this region provides novel evidence that the transcription of Hsp90 is regulated via a dense region of transcription factor binding sites, also containing a region with similarity to the Gamera family of LINE-like repetitive sequences and a genus-specific element of unknown function. Furthermore, we infer a set of gene networks from tissue-specific expression data, and specifically extract an Hsp class-associated network, with 174 genes and 2,226 associations, exhibiting a complex pattern of expression across multiple tissue types. Our results (i) suggest that the heat shock response in the genus Mytilus is regulated by an unexpectedly complex upstream region, and (ii) provide new directions for the use of the heat shock process as a biosensor system for environmental monitoring

    The Molecular Identification of Organic Compounds in the Atmosphere: State of the Art and Challenges

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    Effects of methane outgassing on the Black Sea atmosphere

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    Methane in air and seawater was measured in the Eastern Black Sea during the 10&ndash;18 December 1999 BIGBLACK project cruise. The measurements allowed for the calculation of supersaturation ratios and methane fluxes across the air-sea interface. CH<sub>4</sub> mixing ratios in air were generally in the 1.8&ndash;2.0 ppmv range, while surface (4 m depth) seawater concentrations varied from 4 to 93 ppmv. Above active seep areas, the water was supersaturated to around 500% with respect to the overlying atmosphere. Accordingly, flux densities varied greatly and were up to 3300 umol m<sup>&minus;2</sup> day<sup>&minus;1</sup>. In the Sevastopol harbour, supersaturations up to around 3000%, similar to those at the Danube Delta, were observed, while in the Istanbul harbour supersaturations could not be determined because the very high values of water concentrations led to detector saturation. Simple modelling shows that the observed fluxes do not have any substantial impact on the methane content of the Black Sea atmosphere, as they would only raise its concentrations by less than 50 ppt. On the other hand, calculations performed as part of the CRIMEA project show that mud volcano eruptions could episodically raise the methane concentrations well above their regional background for several tens of kilometres downwind. These calculations, which also apply to mud volcano eruptions elsewhere on the globe, indicate that the spatial extend and the magnitude of the atmospheric perturbation is such that its observation might lie within the capabilities of existing satellite instrumentation such as SCIAMACHY on ENVISAT
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