Sequence-Dependent Effects on the Properties of Semiflexible Biopolymers

Using path integral technique, we show exactly that for a semiflexible biopolymer in constant extension ensemble, no matter how long the polymer and how large the external force, the effects of short range correlations in the sequence-dependent spontaneous curvatures and torsions can be incorporated into a model with well-defined mean spontaneous curvature and torsion as well as a renormalized persistence length. Moreover, for a long biopolymer with large mean persistence length, the sequence-dependent persistence lengths can be replaced by their mean. However, for a short biopolymer or for a biopolymer with small persistence lengths, inhomogeneity in persistence lengths tends to make physical observables very sensitive to details and therefore less predictable

Giant frequency-selective near-field energy transfer in active--passive structures

We apply a fluctuation electrodynamics framework in combination with semianalytical (dipolar) approximations to study amplified spontaneous energy transfer (ASET) between active and passive bodies. We consider near-field energy transfer between semi-infinite planar media and spherical structures (dimers and lattices) subject to gain, and show that the combination of loss compensation and near-field enhancement (achieved by the proximity, enhanced interactions, and tuning of subwavelength resonances) in these structures can result in orders of magnitude ASET enhancements below the lasing threshold. We examine various possible geometric configurations, including realistic materials, and describe optimal conditions for enhancing ASET, showing that the latter depends sensitively on both geometry and gain, enabling efficient and tunable gain-assisted energy extraction from structured surfaces

Disordered, stretched, and semiflexible biopolymers in two dimensions

We study the effects of intrinsic sequence-dependent curvature for a two dimensional semiflexible biopolymer with short-range correlation in intrinsic curvatures. We show exactly that when not subjected to any external force, such a system is equivalent to a system with a well-defined intrinsic curvature and a proper renormalized persistence length. We find the exact expression for the distribution function of the equivalent system. However, we show that such an equivalent system does not always exist for the polymer subjected to an external force. We find that under an external force, the effect of sequence-disorder depends upon the averaging order, the degree of disorder, and the experimental conditions, such as the boundary conditions. Furthermore, a short to moderate length biopolymer may be much softer or has a smaller apparent persistent length than what would be expected from the "equivalent system". Moreover, under a strong stretching force and for a long biopolymer, the sequence-disorder is immaterial for elasticity. Finally, the effect of sequence-disorder may depend upon the quantity considered

Transport in bacteriophage P22-infected Salmonella typhimurium

There was rapid efflux of L-leucine, L-phenylalanine, and α-methyl-D-glucoside after infection of Salmonella typhimurium with the clear plaque mutant C1 of phage P22. The efflux was similar to that observed with cyanide or arsenate treatment except that there was partial recovery in the case of phage infection and almost complete recovery under the condition of lysogeny. There was no efflux after infection with the temperature-sensitive mutant ts16C1 at nonpermissive temperature. Superinfection of superinfection exclusion negative lysogen (sie A - sie B-) with C1 led to efflux, whereas the efflux was much less on superinfection of sie A+ Sie B+ lysogen. These results indicate that an effective injection process is enough to cause depression in the cellular transport processes

On the Hamiltonian structure of Ermakov systems

A canonical Hamiltonian formalism is derived for a class of Ermakov systems specified by several different frequency functions. This class of systems comprises all known cases of Hamiltonian Ermakov systems and can always be reduced to quadratures. The Hamiltonian structure is explored to find exact solutions for the Calogero system and for a noncentral potential with dynamic symmetry. Some generalizations of these systems possessing exact solutions are also identified and solved

Energy saving in fixed wireless broadband networks

International audienceIn this paper, we present a mathematical formulation for saving energy in fixed broadband wireless networks by selectively turning off idle communication devices in low-demand scenarios. This problem relies on a fixed-charge capacitated network design (FCCND), which is very hard to optimize. We then propose heuristic algorithms to produce feasible solutions in a short time.Dans cet article, nous proposons une modélisation en programme linéaire en nombres entiers pour le problème de minimiser la consommation d'énergie dans les réseaux de collecte à faisceaux hertziens en éteignant une partie des équipements lorsque le trafic est bas. Ce problème repose sur un problème de dimensionnement de réseaux dont les arcs ont une capacité fixe, qui est très difficile à résoudre. Nous proposons un algorithme heuristique fournissant rapidement des solutions réalisables

Thresholded Covering Algorithms for Robust and Max-Min Optimization

The general problem of robust optimization is this: one of several possible scenarios will appear tomorrow, but things are more expensive tomorrow than they are today. What should you anticipatorily buy today, so that the worst-case cost (summed over both days) is minimized? Feige et al. and Khandekar et al. considered the k-robust model where the possible outcomes tomorrow are given by all demand-subsets of size k, and gave algorithms for the set cover problem, and the Steiner tree and facility location problems in this model, respectively. In this paper, we give the following simple and intuitive template for k-robust problems: "having built some anticipatory solution, if there exists a single demand whose augmentation cost is larger than some threshold, augment the anticipatory solution to cover this demand as well, and repeat". In this paper we show that this template gives us improved approximation algorithms for k-robust Steiner tree and set cover, and the first approximation algorithms for k-robust Steiner forest, minimum-cut and multicut. All our approximation ratios (except for multicut) are almost best possible. As a by-product of our techniques, we also get algorithms for max-min problems of the form: "given a covering problem instance, which k of the elements are costliest to cover?".Comment: 24 page

Green's function for the Relativistic Coulomb System via Sum Over Perturbation Series

We evaluate the Green's function of the D-dimensional relativistic Coulomb system via sum over perturbation series which is obtained by expanding the exponential containing the potential term $V({\bf x)}$ in the path integral into a power series. The energy spectra and wave functions are extracted from the resulting amplitude.Comment: 13 pages, ReVTeX, no figure

Complex Effective Path: A Semi-Classical Probe of Quantum Effects

We discuss the notion of an effective, average, quantum mechanical path which is a solution of the dynamical equations obtained by extremizing the quantum effective action. Since the effective action can, in general, be complex, the effective path will also, in general, be complex. The imaginary part of the effective action is known to be related to the probability of particle creation by an external source and hence we expect the imaginary part of the effective path also to contain information about particle creation. We try to identify such features using simple examples including that of effective path through the black hole horizon leading to thermal radiation. Implications of this approach are discussed.Comment: 20 pages; no figures; to appear in Phys.Rev.