Open-boundary modal analysis: Interpolation, extrapolation, and filtering

Increasingly accurate remote sensing techniques are available today, and methods such as modal analysis are used to transform, interpolate, and regularize the measured velocity fields. Until recently, the modes used did not incorporate flow across an open boundary of the domain. Open boundaries are an important concept when the domain is not completely closed by a shoreline. Previous modal analysis methods, such as those of Lipphardt et al. (2000), project the data onto closed-boundary modes, and then add a zero-order mode to simulate flow across the boundary. Chu et al. (2003) propose an alternative where the modes are constrained by a prescribed boundary condition. These methods require an a priori knowledge of the normal velocity at the open boundary. This flux must be extrapolated from the data or extracted from a numerical model of a larger-scale domain, increasing the complexity of the operation. In addition, such methods make it difficult to add a threshold on the length scale of open-boundary processes. Moreover, the boundary condition changes in time, and the computation of all or some modes must be done at each time step. Hence real-time applications, where robustness and efficiency are key factors, were hardly practical. We present an improved procedure in which we add scalable boundary modes to the set of eigenfunctions. The end result of open-boundary modal analysis (OMA) is a set of time and data independent eigenfunctions that can be used to interpolate, extrapolate and filter flows on an arbitrary domain with or without flow through segments of the boundary. The modes depend only on the geometry and do not change in time

Transmission of SARS and MERS coronaviruses and influenza virus in healthcare settings: the possible role of dry surface contamination

Viruses with pandemic potential including H1N1, H5N1, and H5N7 influenza viruses, and severe acute respiratory syndrome (SARS)/Middle East respiratory syndrome (MERS) coronaviruses (CoV) have emerged in recent years. SARS-CoV, MERS-CoV, and influenza virus can survive on surfaces for extended periods, sometimes up to months. Factors influencing the survival of these viruses on surfaces include: strain variation, titre, surface type, suspending medium, mode of deposition, temperature and relative humidity, and the method used to determine the viability of the virus. Environmental sampling has identified contamination in field-settings with SARS-CoV and influenza virus, although the frequent use of molecular detection methods may not necessarily represent the presence of viable virus. The importance of indirect contact transmission (involving contamination of inanimate surfaces) is uncertain compared with other transmission routes, principally direct contact transmission (independent of surface contamination), droplet, and airborne routes. However, influenza virus and SARS-CoV may be shed into the environment and be transferred from environmental surfaces to hands of patients and healthcare providers. Emerging data suggest that MERS-CoV also shares these properties. Once contaminated from the environment, hands can then initiate self-inoculation of mucous membranes of the nose, eyes or mouth. Mathematical and animal models, and intervention studies suggest that contact transmission is the most important route in some scenarios. Infection prevention and control implications include the need for hand hygiene and personal protective equipment to minimize self-contamination and to protect against inoculation of mucosal surfaces and the respiratory tract, and enhanced surface cleaning and disinfection in healthcare settings

Intergyre transport in a wind-driven, quasigeostrophic double gyre: An application of lobe dynamics

We study the flow obtained from a three-layer, eddy-resolving quasigeostrophic ocean circulation model subject to an applied wind stress curl. For this model we will consider transport between the northern and southern gyres separated by an eastward jet. We will focus on the use of techniques from dynamical systems theory, particularly lobe dynamics, in the forming of geometric structures that govern transport. By "govern", we mean they can be used to compute Lagrangian transport quantities, such as the flux across the jet. We will consider periodic, quasiperiodic, and chaotic velocity fields, and thus assess the effectiveness of dynamical systems techniques in flows with progressively more spatio-temporal complexity. The numerical methods necessary to implement the dynamical systems techniques and the significance of lobe dynamics as a signature of specific "events", such as rings pinching off from a meandering jet, are also discussed