89 research outputs found

    A standardised sampling protocol for robust assessment of reach-scale fish community diversity in wadeable New Zealand streams

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    The New Zealand fish fauna contains species that are affected not only by river system connectivity, but also by catchment and local-scale changes in landcover, water quality and habitat quality. Consequently, native fish have potential as multi-scale bioindicators of human pressure on stream ecosystems, yet no standardised, repeatable and scientifically defensible methods currently exist for effectively quantifying their abundance or diversity in New Zealand stream reaches. Here we report on the testing of a back-pack electrofishing method, modified from that used by the United States Environmental Protection Agency, on a wide variety of wadeable stream reaches throughout New Zealand. Seventy-three first- to third-order stream reaches were fished with a single pass over 150-345 m length. Time taken to sample a reach using single-pass electrofishing ranged from 1-8 h. Species accumulation curves indicated that, irrespective of location, continuous sampling of 150 stream metres is required to accurately describe reach-scale fish species richness using this approach. Additional species detection beyond 150 m was rare (<10%) with a single additional species detected at only two out of the 17 reaches sampled beyond this distance. A positive relationship was also evident between species detection and area fished, although stream length rather than area appeared to be the better predictor. The method tested provides a standardised and repeatable approach for regional and/or national reporting on the state of New Zealand's freshwater fish communities and trends in richness and abundance over time

    Factors Affecting the Radii of Close-in Transiting Exoplanets

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    The radius of an exoplanet may be affected by various factors, including irradiation, planet mass and heavy element content. A significant number of transiting exoplanets have now been discovered for which the mass, radius, semi-major axis, host star metallicity and stellar effective temperature are known. We use multivariate regression models to determine the dependence of planetary radius on planetary equilibrium temperature T_eq, planetary mass M_p, stellar metallicity [Fe/H], orbital semi-major axis a, and tidal heating rate H_tidal, for 119 transiting planets in three distinct mass regimes. We determine that heating leads to larger planet radii, as expected, increasing mass leads to increased or decreased radii of low-mass (<0.5R_J) and high-mass (>2.0R_J) planets, respectively (with no mass effect on Jupiter-mass planets), and increased host-star metallicity leads to smaller planetary radii, indicating a relationship between host-star metallicity and planet heavy element content. For Saturn-mass planets, a good fit to the radii may be obtained from log(R_p/R_J)=-0.077+0.450 log(M_p/M_J)-0.314[Fe/H]+0.671 log(a/AU)+0.398 log(T_eq/K). The radii of Jupiter-mass planets may be fit by log(R_p/R_J)=-2.217+0.856 log(T_eq/K)+0.291 log(a/AU). High-mass planets' radii are best fit by log(R_p/R_J)=-1.067+0.380 log(T_eq/K)-0.093 log(M_p/M_J)-0.057[Fe/H]+0.019 log(H_tidal/1x10^{20}). These equations produce a very good fit to the observed radii, with a mean absolute difference between fitted and observed radius of 0.11R_J. A clear distinction is seen between the core-dominated Saturn-mass (0.1-0.5M_J) planets, whose radii are determined almost exclusively by their mass and heavy element content, and the gaseous envelope-dominated Jupiter-mass (0.5-2.0M_J) planets, whose radii increase strongly with irradiating flux, partially offset by a power-law dependence on orbital separation.Comment: 14 pages, 14 figures, accepted in A&

    Finding the most variable stars in the Orion Belt with the All Sky Automated Survey

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    We look for high-amplitude variable young stars in the open clusters and associations of the Orion Belt. We use public data from the ASAS-3 Photometric V-band Catalogue of the All Sky Automated Survey, infrared photometry from the 2MASS and IRAS catalogues, proper motions, and the Aladin sky atlas to obtain a list of the most variable stars in a survey area of side 5 deg centred on the bright star Alnilam (eps Ori) in the centre of the Orion Belt. We identify 32 highly-variable stars, of which 16 had not been reported to vary before. They are mostly variable young stars and candidates (16) and background giants (8), but there are also field cataclysmic variables, contact binaries, and eclipsing binary candidates. Of the young stars, which typically are active Herbig Ae/Be and T Tauri stars with Halpha emission and infrared flux excess, we discover four new variables and confirm the variability status of another two. Some of them belong to the well known sigma Orionis cluster. Besides, six of the eight giants are new variables, and three are new periodic variables.Comment: Astronomische Nachrichten, in pres

    Reading between the lines:Disk emission, wind, and accretion during the Z CMa NW outburst

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    (Abridged) We use optical spectroscopy to investigate the disk, wind, and accretion during the 2008 ZCMa NW outburst. Over 1000 optical emission lines reveal accretion, a variable, multi-component wind, and double-peaked lines of disk origin. The variable, non-axisymmetric, accretion-powered wind has slow (\sim 0 km s1^{-1}), intermediate (\sim -100 km s1^{-1}) and fast (\geq -400 km s1^{-1}) components. The fast components are of stellar origin and disappear in quiescence, while the slow component is less variable and could be related to a disk wind. The changes in the optical depth of the lines between outburst and quiescence are consistent with increased accretion being responsible for the observed outburst. We derive an accretion rate of 104^{-4} M_\odot/yr in outburst. The Fe I and weak Fe II lines arise from an irradiated, flared disk at \sim0.5-3 ×\timesM_*/16M_\odot au with asymmetric upper layers, revealing that the energy from the accretion burst is deposited at scales below 0.5 au. Some line profiles have redshifted asymmetries, but the system is unlikely sustained by magnetospheric accretion, especially in outburst. The accretion-related structures extend over several stellar radii and, like the wind, are likely non-axisymmetric. The stellar mass may be \sim6-8 M_\odot, lower than previously thought (\sim16 M_\odot). Emission line analysis is found to be a powerful tool to study the innermost regions and accretion in stars within a very large range of effective temperatures. The density ranges in the disk and accretion structures are higher than in late-type stars, but the overall behavior, including the innermost disk emission and variable wind, is very similar independently of the spectral type. Our work suggests a common outburst behavior for stars with spectral types ranging from M-type to intermediate-mass stars.Comment: Accepted by A&A, 21 pages plus online appendix. Version 2: Minor typos corrected. Version 3: Note on DIBs added, typos correcte

    Combined point of care nucleic acid and antibody testing for SARS-CoV-2 following emergence of D614G Spike Variant

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    Rapid COVID-19 diagnosis in hospital is essential, though complicated by 30-50% of nose/throat swabs being negative by SARS-CoV-2 nucleic acid amplification testing (NAAT). Furthermore, the D614G spike mutant now dominates the pandemic and it is unclear how serological tests designed to detect anti-Spike antibodies perform against this variant. We assess the diagnostic accuracy of combined rapid antibody point of care (POC) and nucleic acid assays for suspected COVID-19 disease due to either wild type or the D614G spike mutant SARS-CoV-2. The overall detection rate for COVID-19 is 79.2% (95CI 57.8-92.9%) by rapid NAAT alone. Combined point of care antibody test and rapid NAAT is not impacted by D614G and results in very high sensitivity for COVID-19 diagnosis with very high specificity

    Erratum to: Methods for evaluating medical tests and biomarkers

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    [This corrects the article DOI: 10.1186/s41512-016-0001-y.]

    International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.

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    Primary biliary cirrhosis (PBC) is a classical autoimmune liver disease for which effective immunomodulatory therapy is lacking. Here we perform meta-analyses of discovery data sets from genome-wide association studies of European subjects (n=2,764 cases and 10,475 controls) followed by validation genotyping in an independent cohort (n=3,716 cases and 4,261 controls). We discover and validate six previously unknown risk loci for PBC (Pcombined<5 × 10(-8)) and used pathway analysis to identify JAK-STAT/IL12/IL27 signalling and cytokine-cytokine pathways, for which relevant therapies exist
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