Allometry of carbon and nitrogen content and growth rate in a diverse range of coccolithophores

As both photoautotrophs and calcifiers, coccolithophores play important roles in ecosystems and biogeochemical cycles. Though some species form blooms in high-latitude waters, low-latitude communities exhibit high diversity and niche diversification. Despite such diversity, our understanding of the clade relies on knowledge of Emiliana huxleyi. To address this, we examine carbon (C) and nitrogen (N) content of strains (n = 9) from the main families of the calcifying Haptophyceae, as well as allometry and cell size frequency across extant species. Coccolithophore cell size is constrained, with ~71% of 159 species smaller than 10 μm in diameter. Growth rates scale with cell biovolume (μ = 1.83 × cell volume(−0.19)), with an exponent close to metabolic theory. Organic carbon (C) per cell is lower than for other phytoplankton, providing a coccolithophore-specific relationship between cell organic C content and biovolume (pg C cell(−1) = 0.30 × cell volume(0.70)). Organic C to N ratios (~8.3 mol:mol) are similar to other phytoplankton, implying little additional N cost for calcification and efficient retention and recycling of cell N. Our results support observations that coccolithophores are efficient competitors in low-nutrient conditions, able to photosynthesize, calcify and run the routine metabolic machinery necessary without any additional need for N relative to noncalcifying algae

Surface ocean carbon budget in the 2017 south Georgia diatom bloom: Observations and validation of profiling biogeochemical argo floats

Estimates of the partial pressure of CO2 (pCO2) derived from biogeochemical Argo floats have the potential to improve our knowledge of the highly variable and partially observed Southern Ocean carbon sink through sampling at improved temporal and spatial resolution. Here we use the data from six biogeochemical Argo floats to characterise near-surface dissolved inorganic carbon (DIC) concentrations and fluxes at the site of an intense (Chl-a >3 mg m−3) mesoscale diatom bloom situated northwest of South Georgia. Concurrently, we provide independent analysis and validation of the methodology used by the Southern Ocean Carbon and Climate Observational and Modelling (SOCCOM) project for deriving surface pCO2 from float-based pH and oxygen measurements. We compare the float observations with co-located ship data from bottle samples over a month-long period. When compared to data sampled within 24 h and 25 km of each float profile, we find good agreement with a mean offset of −0.005 ± 0.018 (1σ) between float pH and bottle-derived pH. This translates to comparable pCO2 estimates between ship measurements and floats with a mean difference of 2.6 ± 12.8 (1σ) μatm, providing support for the use of biogeochemical Argo float data to supplement shipboard pCO2 measurements in the Southern Ocean. Based on float-derived pCO2 we calculate a sizeable local flux of CO2 of 24 ± 7 mmol C m−2 d−1 (over a 27-day period) from the atmosphere into the surface mixed layer, driven by a large air-sea pCO2 gradient and strong but variable winds. Despite the considerable air-sea flux, the local mixed layer carbon budget appears to be dominated by entrainment and detrainment of carbon-rich waters into and out of the mixed layer. However, given the large uncertainties associated with these fluxes and the significant challenges associated with closing the mixed layer budget, further research is required to refine float-based mixed layer DIC fluxes

Surface ocean carbon budget in the 2017 south Georgia diatom bloom: Observations and validation of profiling biogeochemical argo floats

Estimates of the partial pressure of CO2 (pCO2) derived from biogeochemical Argo floats have the potential to improve our knowledge of the highly variable and partially observed Southern Ocean carbon sink through sampling at improved temporal and spatial resolution. Here we use the data from six biogeochemical Argo floats to characterise near-surface dissolved inorganic carbon (DIC) concentrations and fluxes at the site of an intense (Chl-a >3 mg m−3) mesoscale diatom bloom situated northwest of South Georgia. Concurrently, we provide independent analysis and validation of the methodology used by the Southern Ocean Carbon and Climate Observational and Modelling (SOCCOM) project for deriving surface pCO2 from float-based pH and oxygen measurements. We compare the float observations with co-located ship data from bottle samples over a month-long period. When compared to data sampled within 24 h and 25 km of each float profile, we find good agreement with a mean offset of −0.005 ± 0.018 (1σ) between float pH and bottle-derived pH. This translates to comparable pCO2 estimates between ship measurements and floats with a mean difference of 2.6 ± 12.8 (1σ) μatm, providing support for the use of biogeochemical Argo float data to supplement shipboard pCO2 measurements in the Southern Ocean. Based on float-derived pCO2 we calculate a sizeable local flux of CO2 of 24 ± 7 mmol C m−2 d−1 (over a 27-day period) from the atmosphere into the surface mixed layer, driven by a large air-sea pCO2 gradient and strong but variable winds. Despite the considerable air-sea flux, the local mixed layer carbon budget appears to be dominated by entrainment and detrainment of carbon-rich waters into and out of the mixed layer. However, given the large uncertainties associated with these fluxes and the significant challenges associated with closing the mixed layer budget, further research is required to refine float-based mixed layer DIC fluxes

HNRNPC haploinsufficiency affects alternative splicing of intellectual disability-associated genes and causes a neurodevelopmental disorder

Heterogeneous nuclear ribonucleoprotein C (HNRNPC) is an essential, ubiquitously abundant protein involved in mRNA processing. Genetic variants in other members of the HNRNP family have been associated with neurodevelopmental disorders. Here, we describe 13 individuals with global developmental delay, intellectual disability, behavioral abnormalities, and subtle facial dysmorphology with heterozygous HNRNPC germline variants. Five of them bear an identical in-frame deletion of nine amino acids in the extreme C terminus. To study the effect of this recurrent variant as well as HNRNPC haploinsufficiency, we used induced pluripotent stem cells (iPSCs) and fibroblasts obtained from affected individuals. While protein localization and oligomerization were unaffected by the recurrent C-terminal deletion variant, total HNRNPC levels were decreased. Previously, reduced HNRNPC levels have been associated with changes in alternative splicing. Therefore, we performed a meta-analysis on published RNA-seq datasets of three different cell lines to identify a ubiquitous HNRNPC-dependent signature of alternative spliced exons. The identified signature was not only confirmed in fibroblasts obtained from an affected individual but also showed a significant enrichment for genes associated with intellectual disability. Hence, we assessed the effect of decreased and increased levels of HNRNPC on neuronal arborization and neuronal migration and found that either condition affects neuronal function. Taken together, our data indicate that HNRNPC haploinsufficiency affects alternative splicing of multiple intellectual disability-associated genes and that the developing brain is sensitive to aberrant levels of HNRNPC. Hence, our data strongly support the inclusion of HNRNPC to the family of HNRNP-related neurodevelopmental disorders. [Display omitted] We identified genetic variants of HNRNPC in 13 individuals with intellectual disability and global developmental delay. Through a meta-analysis of multiple cell types, we found that loss of HNRNPC affects alternative splicing, in particular of intellectual disability-associated genes. In vivo assays confirmed that neurodevelopment was affected by aberrant HNRNPC levels